PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7DS_05F0F0B64.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 97aa MW: 10949.4 Da PI: 5.9123 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.1 | 4.3e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +ri+n +nrqvtfskRr g++KKA EL +LCda+ a+i+fsstg+ly+++s Traes_7DS_05F0F0B64.1 9 ERIDNPTNRQVTFSKRRGGLMKKARELAILCDADLALIVFSSTGRLYDFAS 59 69***********************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.9E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.978 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.92E-43 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 2.35E-32 | 2 | 89 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 97 aa Download sequence Send to blast |
MGRGKIVIER IDNPTNRQVT FSKRRGGLMK KARELAILCD ADLALIVFSS TGRLYDFASS 60 SGMEAILERY QEAKEEHYGV LNPTSEQSVQ NREPETE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 3e-24 | 1 | 93 | 1 | 92 | MEF2 CHIMERA |
6bz1_B | 3e-24 | 1 | 93 | 1 | 92 | MEF2 CHIMERA |
6bz1_C | 3e-24 | 1 | 93 | 1 | 92 | MEF2 CHIMERA |
6bz1_D | 3e-24 | 1 | 93 | 1 | 92 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ512329 | 1e-142 | DQ512329.1 Triticum aestivum MADS-box transcription factor TaAGL6 (AGL6) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020153606.1 | 3e-59 | MADS-box transcription factor 25-like | ||||
Swissprot | Q84NC5 | 2e-44 | MAD25_ORYSJ; MADS-box transcription factor 25 | ||||
TrEMBL | A0A3B6T9R1 | 6e-65 | A0A3B6T9R1_WHEAT; Uncharacterized protein | ||||
STRING | Traes_7DS_05F0F0B64.1 | 2e-66 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14210.1 | 1e-31 | AGAMOUS-like 44 |
Publications ? help Back to Top | |||
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