PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7DS_016F8E2EA.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 727aa MW: 81919.4 Da PI: 6.5032 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 72.1 | 1.2e-22 | 106 | 192 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 Y++Y++++GFsvrk k+++ + +++i ++++ Cskeg +e ek + +e+ + ++trt+C+a+++ + +++g+w+v++l+++HnH+l Traes_7DS_016F8E2EA.1 106 LYCDYGHRTGFSVRKGKQSYFTGTKRIRTKDYFCSKEGLKEAEKLT--DENFNDPHTRTNCRAMVRFRANSQGEWRVIRLVSDHNHNL 191 7*****************************************9988..9999***********************************9 PP FAR1 90 a 90 + Traes_7DS_016F8E2EA.1 192 V 192 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.6E-20 | 106 | 192 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.8E-27 | 316 | 410 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.606 | 599 | 635 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.0036 | 610 | 637 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 727 aa Download sequence Send to blast |
MVNTDGEGAD AGGGDPMCVD ESAGPVVVGA DQCEGARLQD SGAAVGIEET REGQVPVSHP 60 GGGMRVRGAT VEEAENEEAP TVQGSKEGAE ELLLKVVYSE EEAYKLYCDY GHRTGFSVRK 120 GKQSYFTGTK RIRTKDYFCS KEGLKEAEKL TDENFNDPHT RTNCRAMVRF RANSQGEWRV 180 IRLVSDHNHN LVRPEERHLL RSAKSLIAGR SCSAADAVLC GGYQLGGVPS QMAASTSVTN 240 NAETPRQDLL PGFSGITRTS AVGTGELQRI VSHLKSRANL DGMFYWDVQL DRAGRMSNFF 300 WRDGRSRMDY DCFGDVVVFD STYRLNKQNY IVAPFVGVNH HWQTTMYGCA LLADDSMSSF 360 TWLFKSFLEA MGNRQPRSIF TNQDQVMSNA IEEVLPNTCH RIAHWHIQKN AASRLGALNA 420 SKAFNKMFTK CMQGCDTEAE FEGTWAAMLR EFKLQDNKWL SKLYKLKQKW CGALNKCTFD 480 GGVENEPQCD SLSNIFTCIV DKSTSLSTIV AAVDKLTEDW REKEFDEDVR CCQRPLSCII 540 KHSDILNHAA KVYTHRIYKL FETYFLDGCG ATKFKALPCE DSDTYRFEMT MQGRGSRVCT 600 VHLNMSTMQL TCSCSQFETM GLLCPHTLKA LSIKNVGKIP EIYILKRWTR DAKQWVFNPK 660 QYESSYQECM DDEAGYCNHA MRYAYDLVMK SEGQEELRRS LWEALEGGEK ELEKYQNATQ 720 YAQSYAT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020182740.1 | 0.0 | protein FAR1-RELATED SEQUENCE 9-like isoform X1 | ||||
Refseq | XP_020182741.1 | 0.0 | protein FAR1-RELATED SEQUENCE 9-like isoform X1 | ||||
TrEMBL | A0A453QFB7 | 0.0 | A0A453QFB7_AEGTS; Uncharacterized protein | ||||
STRING | Traes_7DS_016F8E2EA.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 3e-85 | FAR1-related sequence 5 |
Publications ? help Back to Top | |||
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