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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7DL_C89614A4D.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ARF | ||||||||
Protein Properties | Length: 817aa MW: 90494.6 Da PI: 6.4362 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.6 | 5.8e-24 | 44 | 145 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f+k+lt sd++++g +++p++ ae+ ++++++ +l +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+ Traes_7DL_C89614A4D.1 44 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftMQPPAQ--ELFAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVL 129 99*****************************96555544..8********************************************** PP EEE-SSSEE..EEEEE-S CS B3 82 Fkldgrsefelvvkvfrk 99 F ++++ +l+++++r+ Traes_7DL_C89614A4D.1 130 FI--WNDNNQLLLGIRRA 145 **..7777778**99997 PP | |||||||
2 | Auxin_resp | 116.8 | 1.8e-38 | 170 | 253 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaast+s F+++YnPras+ eFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdld vrWpnS+Wrs+k Traes_7DL_C89614A4D.1 170 AAHAASTNSRFTIFYNPRASPCEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDAVRWPNSHWRSVK 253 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.8E-48 | 29 | 173 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-42 | 36 | 159 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.67E-22 | 43 | 144 | No hit | No description |
PROSITE profile | PS50863 | 13.042 | 44 | 146 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-22 | 44 | 145 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.2E-24 | 44 | 146 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.4E-33 | 170 | 253 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 3.14E-7 | 674 | 755 | No hit | No description |
Pfam | PF02309 | 4.8E-8 | 676 | 765 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 21.308 | 679 | 763 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 817 aa Download sequence Send to blast |
MHADAETDEV YAQMTLQPLN PQELKDPYLP AELGTANKQP TNYFCKTLTA SDTSTHGGFS 60 VPRRAAEKVF PPLDFTMQPP AQELFAKDLH GNEWKFRHIF RGQPKRHLLT TGWSVFVSAK 120 RLVAGDSVLF IWNDNNQLLL GIRRATRPQT VMPSSVLSSD SMHIGLLAAA AHAASTNSRF 180 TIFYNPRASP CEFVIPLAKY VKAVYHTRIS VGMRFRMLFE TEESSVRRYM GTITGISDLD 240 AVRWPNSHWR SVKVGWDEST AGERQPRVSL WEIEPLTTFP MYPTPFPLRL KRPWPTGLPS 300 LHGGKDDDLT SSLMWLRDSA NPGFQSLNFG GAGMNPWMQP RLDASLLGLQ PDIYQTMAAA 360 AFQDPTKMSP TMLQFQQPQN MVGRATPLLQ SQILQQMQPQ FQQQSYLQNM NGTTIQGQAH 420 SEFLQQQLQR CQSFNEQKPQ LLQQQESNQQ QSQGMQVPQH QHMQQQKNMA NYQPAYSQLS 480 PGPQSSPAAL QTASPFSQPQ SFSDTNMSSL SPSGAPTMHN TLGPFSSETA SHLSMSRPTA 540 VPVPDSWSSK RVAVESLIPS RPQSTPHMEQ LSSTPPSIPQ SSALAPLPGR GCLVDQDGSS 600 DPQNHLLFGV NIDSHSLLMQ GGLHDENDST AIPYSTSNFL SPSQHDFSLD QTLNSSGCLD 660 ESGYVPCSHT PDQVNQPPAT FVKVYKSGTY GRSLDITKFS NYHELRRDLG RLFGLEGQLE 720 DPMRSGWQLV FVDREEDVLL VGDDPWQEFV NSVSCIKILS PQEVQQMGKQ GLELLSSAPG 780 KRLGGGGGSS CDDYASRQES RSLSTGIASV GSVEVEF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-120 | 1 | 274 | 115 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00033 | PBM | Transfer from AT5G37020 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020157111.1 | 0.0 | auxin response factor 17 | ||||
Swissprot | Q653U3 | 0.0 | ARFQ_ORYSJ; Auxin response factor 17 | ||||
TrEMBL | A0A3B6TQ35 | 0.0 | A0A3B6TQ35_WHEAT; Auxin response factor | ||||
STRING | Traes_7DL_C89614A4D.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2012 | 36 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | auxin response factor 6 |
Publications ? help Back to Top | |||
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