 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Traes_7DL_BC8BA3B78.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
| Family |
C3H |
| Protein Properties |
Length: 302aa MW: 31502.8 Da PI: 9.8157 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Traes_7DL_BC8BA3B78.1 | genome | IWGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 20.7 | 7.2e-07 | 38 | 62 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
k ++C f+ t C++G++C+F H
Traes_7DL_BC8BA3B78.1 38 KSKPCTKFFSTAGCPFGSSCHFLHN 62
7789********************7 PP
|
| 2 | zf-CCCH | 24 | 7e-08 | 104 | 129 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
kt+lC+ f Ck G++C+FaHg+
Traes_7DL_BC8BA3B78.1 104 KTRLCNKFNTAEGCKWGNKCHFAHGE 129
9***********************96 PP
|
| 3 | zf-CCCH | 37.4 | 4.2e-12 | 268 | 293 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+kt+lC++f + G C +GdrC+FaHg+
Traes_7DL_BC8BA3B78.1 268 FKTKLCDNFNK-GSCTFGDRCHFAHGE 293
69*********.*************96 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50103 | 13.159 | 36 | 64 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.36 | 36 | 63 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.01E-6 | 37 | 64 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.3E-8 | 37 | 62 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 3.5E-5 | 38 | 62 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 5.8E-14 | 99 | 134 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 4.32E-8 | 101 | 133 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.878 | 102 | 130 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.07 | 102 | 129 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 5.8E-5 | 104 | 129 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00322 | 6.8E-11 | 172 | 242 | IPR004087 | K Homology domain |
| Gene3D | G3DSA:3.30.1370.10 | 2.5E-15 | 173 | 241 | IPR004088 | K Homology domain, type 1 |
| PROSITE profile | PS50084 | 14.99 | 173 | 237 | IPR004088 | K Homology domain, type 1 |
| Pfam | PF00013 | 2.4E-11 | 175 | 239 | IPR004088 | K Homology domain, type 1 |
| SuperFamily | SSF54791 | 5.99E-16 | 175 | 269 | IPR004088 | K Homology domain, type 1 |
| CDD | cd00105 | 1.10E-13 | 175 | 238 | No hit | No description |
| Gene3D | G3DSA:4.10.1000.10 | 2.3E-16 | 266 | 298 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 6.28E-9 | 267 | 297 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 16.943 | 267 | 294 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 9.0E-8 | 267 | 293 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 9.8E-10 | 268 | 293 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 302 aa
Download sequence Send
to blast |
MFSYKCQDFS KINTVLTGGS NKFGVAESES VQTGVGSKSK PCTKFFSTAG CPFGSSCHFL 60
HNFPGGHQAV SKMTNLGGPA VSAPQGRMPM GPGVPDGPPT PSLKTRLCNK FNTAEGCKWG 120
NKCHFAHGER ELGKPMLLNN SMAPPMGPRP NGHFQPPPMP GPDMVPPSTF GASATAKISV 180
DASLAGAIIG KGGVNTKHIS RMTGAKLAIR DNEADPNHKN IELEGSFDQV NHASAMVKEL 240
ILRIGGNAPP QAKNPGRGPA GGGGGSNFKT KLCDNFNKGS CTFGDRCHFA HGESELRKSA 300
AA
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK356664 | 0.0 | AK356664.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1037L23. |
