PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DL_6B4FA59C6.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 343aa    MW: 36762.7 Da    PI: 9.5875
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DL_6B4FA59C6.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding461.3e-1499143347
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            +WT+eE+  ++ + ++lG+g+W+ Ia+ + ++Rt+ q+ s+ qky
  Traes_7DL_6B4FA59C6.1  99 PWTEEEHRTFLAGLEKLGKGDWRGIAKNFVTTRTPTQVASHAQKY 143
                            8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.96892148IPR017930Myb domain
SuperFamilySSF466891.22E-1793148IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-1895147IPR006447Myb domain, plants
SMARTSM007171.4E-1196146IPR001005SANT/Myb domain
PfamPF002492.0E-1299143IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-1299142IPR009057Homeodomain-like
CDDcd001672.88E-1099144No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MPQDSRPPGM RLFGVTIAPA PAPQLDPPDG DRDPSPNPPV AVREDVMRKC KSMGNLATLA  60
SACPSGDAGG AGDGYLSDGG LLQSSGKRRR AQERKKAVPW TEEEHRTFLA GLEKLGKGDW  120
RGIAKNFVTT RTPTQVASHA QKYFLRQTNP NKKKRRSSLF DMMASDLSPA PNCPILPPTM  180
AKFHDMVTMT NQLQNSSLEG VSSSNAANLA KQVTRDLPPP VPSFTATNVD ASLSKMNHMD  240
CFSRVPSLFR PIPIVPEGTP PATANTSTLT FEANLTSCTS AFLIPQSGPS PLPPATTAKT  300
DHPAENKDLE LTVGLPSQQN MPSQQNMTNN ISSRNAVGVI QVV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151155KKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519470.0JF951947.1 Triticum aestivum clone TaMYB64 MYB-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193360.10.0uncharacterized protein LOC109779160 isoform X1
TrEMBLA0A3B6TSL90.0A0A3B6TSL9_WHEAT; Uncharacterized protein
TrEMBLA0A453RYV00.0A0A453RYV0_AEGTS; Uncharacterized protein
TrEMBLG9DRB00.0G9DRB0_WHEAT; MYB-related protein
STRINGTraes_7DL_6B4FA59C6.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58583652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.12e-37MYB_related family protein
Publications ? help Back to Top
  1. Zhang L,Zhao G,Jia J,Liu X,Kong X
    Molecular characterization of 60 isolated wheat MYB genes and analysis of their expression during abiotic stress.
    J. Exp. Bot., 2012. 63(1): p. 203-14
    [PMID:21934119]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]