PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7DL_36AA043D1.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C2H2 | ||||||||
Protein Properties | Length: 87aa MW: 9395.83 Da PI: 8.202 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.3 | 0.00012 | 68 | 81 | 1 | 14 |
EEETTTTEEESSHH CS zf-C2H2 1 ykCpdCgksFsrks 14 +kC++C+ksF++k+ Traes_7DL_36AA043D1.2 68 FKCSKCNKSFTSKD 81 89*********987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 87 aa Download sequence Send to blast |
AAAPACRLPA RRVAVAAAAI ALDPFQETKS EQNDTSETEV FACPVCYEPL IRKGPPGMNL 60 PAIYRSGFKC SKCNKSFTSK DVFLDLT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK360398 | 7e-81 | AK360398.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1117E13. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020170884.1 | 2e-50 | uncharacterized methyltransferase At2g41040, chloroplastic-like isoform X1 | ||||
Swissprot | Q0WPT7 | 2e-23 | Y2104_ARATH; Uncharacterized methyltransferase At2g41040, chloroplastic | ||||
TrEMBL | A0A3B6TR83 | 2e-49 | A0A3B6TR83_WHEAT; Uncharacterized protein | ||||
STRING | Traes_7DL_36AA043D1.2 | 1e-57 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1920 | 3 | 5 |
Publications ? help Back to Top | |||
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