PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7DL_310E46F15.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 718aa MW: 78062.6 Da PI: 6.5122 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.8 | 3.2e-15 | 24 | 68 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+ E++++++a k++G W +I +++g ++t+ q++s+ qk+ Traes_7DL_310E46F15.3 24 RERWTEAEHKRFLEALKLYGRA-WQRIEEHVG-TKTAVQIRSHAQKF 68 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.84E-16 | 18 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.147 | 19 | 73 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.6E-16 | 22 | 71 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 6.5E-12 | 23 | 71 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.8E-8 | 24 | 64 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.5E-12 | 24 | 67 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.03E-8 | 26 | 69 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0042754 | Biological Process | negative regulation of circadian rhythm | ||||
GO:0043433 | Biological Process | negative regulation of sequence-specific DNA binding transcription factor activity | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 718 aa Download sequence Send to blast |
MEINSSGEET MIKVRKPYTI TKQRERWTEA EHKRFLEALK LYGRAWQRIE EHVGTKTAVQ 60 IRSHAQKFFT KLEKEAINNG TSPGQAHDID IPPPRPKRKP NCPYPRKGCL SSETPTREVP 120 KSSVSLSNSN AEMGSNGTLQ LTCIQKLQRK ELSENGSCSE VINIFREAPS ASFSSSNKSS 180 SNHGVSGGIE PTKTENKDIA TMERKSTSID VGKDVKDIND QEMERNNRVH ISSNYDRSHE 240 DCLDNSMKHM QLKPNTAETT YTGQHAASAP LYQMNKTGAT GAPDPGTEGS HPDQTSDQVG 300 GANGSMDCIH PTLLVDPKMG SSSTAQPFPH NYAGFAPTMQ CHCNQDAYRS SLNMSSTFSN 360 MLVSTLLSNP TVHAAARLAA SYWPAADSNI PVGPNQEVFA ENAQGRHIGS PPSMASVVAA 420 TVAVASAWWA TQGLLPLFAP PMAFPFVPVP TASFPTADVQ RATENFPVDN APKECQVAQE 480 QGQPEAMIVV ASSVSDESGK GEVSPHTELN ISPADKVETT PPTGAETSDA FGNKKKQDRS 540 SCGSNTPSSS DVEAEHVPEN QDQANDKTQQ ACCSNSSAGD MNHRRFRNIS STNDSWKEVS 600 EEGRMAFDKL FSRGKLPQSF SPPQAEGLKV VPRGEQDEAT TVTVDLNKSA AVMDHELDTL 660 VGPRAATFPI ELSHLNMKSR RTGFKPYKRC SVEAKENRVP ASDEVGTKRI RLDSEPST |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00654 | PBM | Transfer from LOC_Os08g06110 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK360966 | 0.0 | AK360966.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1129K17. | |||
GenBank | JN603242 | 0.0 | JN603242.1 Hordeum vulgare circadian clock associated 1 (CCA1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020195458.1 | 0.0 | protein LHY | ||||
Refseq | XP_020195459.1 | 0.0 | protein LHY | ||||
Refseq | XP_020195460.1 | 0.0 | protein LHY | ||||
Refseq | XP_020195461.1 | 0.0 | protein LHY | ||||
TrEMBL | A0A3B6TKA2 | 0.0 | A0A3B6TKA2_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453RX47 | 0.0 | A0A453RX47_AEGTS; Uncharacterized protein | ||||
STRING | Traes_7DL_310E46F15.3 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6031 | 34 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01060.3 | 1e-40 | MYB_related family protein |
Publications ? help Back to Top | |||
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