PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7BS_592EC3AB1.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 178aa    MW: 19975.8 Da    PI: 11.2553
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7BS_592EC3AB1.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.78.5e-30959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           kri+nks rqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++g+l+e+s+
  Traes_7BS_592EC3AB1.1  9 KRIDNKSSRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFST 59
                           79***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.3E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.8161IPR002100Transcription factor, MADS-box
CDDcd002655.03E-38261No hitNo description
SuperFamilySSF554551.31E-28264IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.9E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-313859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MGRGKVELKR IDNKSSRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFST RGRLFEFSTS  60
SWYARSRNTR FILLRLVFLY EKLCSFFLQD LPSGGLAAMP CIHLGRGRMA GMLAPLLLLL  120
FWGRVCRVFS FTIHQRSGCF PFPLLVLMRV EVAVIRGGAA DNGLQEGSIL ILAISRSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P6e-19161161Myocyte-specific enhancer factor 2B
1tqe_Q6e-19161161Myocyte-specific enhancer factor 2B
1tqe_R6e-19161161Myocyte-specific enhancer factor 2B
1tqe_S6e-19161161Myocyte-specific enhancer factor 2B
6c9l_A6e-19161161Myocyte-specific enhancer factor 2B
6c9l_B6e-19161161Myocyte-specific enhancer factor 2B
6c9l_C6e-19161161Myocyte-specific enhancer factor 2B
6c9l_D6e-19161161Myocyte-specific enhancer factor 2B
6c9l_E6e-19161161Myocyte-specific enhancer factor 2B
6c9l_F6e-19161161Myocyte-specific enhancer factor 2B
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ5123475e-96DQ512347.1 Triticum aestivum MADS-box transcription factor TaAGL3 (AGL3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A446Y2U21e-124A0A446Y2U2_TRITD; Uncharacterized protein
STRINGTraes_7BS_592EC3AB1.11e-125(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.23e-31MIKC_MADS family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]