PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7BS_209950516.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 77aa MW: 8587.08 Da PI: 10.8526 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 80.5 | 1.2e-25 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 r+en s+rqvtfskRr g+lKKA EL +LC+++v vi+fsst +lyey++ Traes_7BS_209950516.1 10 RVENMSRRQVTFSKRRGGLLKKARELAILCNVQVGVIVFSSTCRLYEYAN 59 79**********************************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 9.1E-32 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 27.544 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.5E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-24 | 3 | 65 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.5E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.5E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 77 aa Download sequence Send to blast |
MVRGKIVIRR VENMSRRQVT FSKRRGGLLK KARELAILCN VQVGVIVFSS TCRLYEYANS 60 TTATTMGTTC SLDDATL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020153605.1 | 2e-33 | MADS-box transcription factor 25-like | ||||
Swissprot | Q6VAM4 | 7e-24 | MAD23_ORYSJ; MADS-box transcription factor 23 | ||||
TrEMBL | A0A3B6S8Y8 | 9e-41 | A0A3B6S8Y8_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A3B6SD00 | 6e-41 | A0A3B6SD00_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446Y1P5 | 4e-41 | A0A446Y1P5_TRITD; Uncharacterized protein | ||||
TrEMBL | A0A446Y1V3 | 6e-41 | A0A446Y1V3_TRITD; Uncharacterized protein | ||||
TrEMBL | A0A446Y1Z6 | 7e-41 | A0A446Y1Z6_TRITD; Uncharacterized protein | ||||
TrEMBL | A0A446Y266 | 9e-41 | A0A446Y266_TRITD; Uncharacterized protein | ||||
STRING | Traes_7BS_209950516.1 | 9e-49 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14210.1 | 3e-26 | AGAMOUS-like 44 |
Publications ? help Back to Top | |||
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