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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7BS_1542EA53A.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | SBP | ||||||||
Protein Properties | Length: 152aa MW: 17421 Da PI: 10.7375 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 69.7 | 5.7e-22 | 2 | 39 | 41 | 78 |
EE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 41 rfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 rfCqqCsrfh l+efDe+krsCr+rL++hn+rrrk+q+ Traes_7BS_1542EA53A.1 2 RFCQQCSRFHLLTEFDEAKRSCRKRLDGHNRRRRKPQP 39 9**********************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.7E-11 | 1 | 24 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.2E-14 | 1 | 36 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 19.392 | 1 | 37 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.28E-19 | 2 | 42 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MRFCQQCSRF HLLTEFDEAK RSCRKRLDGH NRRRRKPQPD VMNSASFMTS QQGTRFSSFP 60 TPRPEQNWPG IIKTEENPYY AHQLPLGISN RQHFGGSAST YAKEGRRFPF LQEGEINFAT 120 GXXXXXXXXX XXXXXXLLPR AAAAAARCSL MG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-13 | 2 | 36 | 50 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 19 | 36 | KRSCRKRLDGHNRRRRKP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK374598 | 1e-162 | AK374598.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3070D10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020194874.1 | 6e-84 | squamosa promoter-binding-like protein 16 | ||||
Swissprot | Q6YZE8 | 1e-59 | SPL16_ORYSJ; Squamosa promoter-binding-like protein 16 | ||||
TrEMBL | A0A3B6SFZ3 | 7e-84 | A0A3B6SFZ3_WHEAT; GW8-B1 | ||||
TrEMBL | A0A446YDE5 | 7e-84 | A0A446YDE5_TRITD; Uncharacterized protein | ||||
STRING | Traes_7BS_1542EA53A.1 | 7e-96 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1755 | 37 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 1e-21 | SBP family protein |