PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7BS_03F39ED94.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HSF | ||||||||
Protein Properties | Length: 62aa MW: 7543.56 Da PI: 10.2306 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 76.5 | 4.5e-24 | 2 | 61 | 24 | 92 |
SSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS HSF_DNA-bind 24 ngnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 +g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ F++g+k+ Traes_7BS_03F39ED94.1 2 DGSAFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRGEKR 61 789****************************************999.........***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 1.5E-20 | 1 | 62 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.3E-26 | 1 | 61 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 9.25E-22 | 1 | 61 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.2E-21 | 2 | 61 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.8E-11 | 18 | 30 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 19 | 43 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.8E-11 | 31 | 43 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 62 aa Download sequence Send to blast |
EDGSAFIVWR PAEFARDLLP KYFKHNNFSS FVRQLNTYGF RKIVPDRWEF ANDCFRRGEK 60 RL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 4e-17 | 3 | 62 | 43 | 113 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ771755 | 4e-97 | JQ771755.1 Triticum aestivum HSF3 mRNA, complete cds. | |||
GenBank | KP063542 | 4e-97 | KP063542.1 Triticum aestivum heat-responsive transcription factor (HSF-2) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020197754.1 | 5e-41 | heat stress transcription factor B-2b-like | ||||
Swissprot | Q652B0 | 5e-40 | HFB2C_ORYSJ; Heat stress transcription factor B-2c | ||||
TrEMBL | F2EA61 | 4e-40 | F2EA61_HORVV; Predicted protein | ||||
TrEMBL | M0Z0T0 | 4e-40 | M0Z0T0_HORVV; Uncharacterized protein | ||||
STRING | MLOC_75166.4 | 6e-41 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP121 | 37 | 394 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11660.1 | 3e-39 | HSF family protein |
Publications ? help Back to Top | |||
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