PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7BL_A201C1A091.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 147aa MW: 16884.3 Da PI: 7.9922 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 50.3 | 8e-16 | 3 | 108 | 18 | 90 |
FAR1 18 kskkskrngeitkrtfvCskegkreeekkk..................................tekerrtraetrtgCkaklkvkk 70 +s+k ++ge +k++fvC+k k++ ++ ++k+r++ + +tgCkak+ vk Traes_7BL_A201C1A091.2 3 TSRKDVKTGELIKQQFVCNKFRKPDVDDGGaekipvlddiveqakddnedeaivfldddskgktRSKKRKRDKIVQTGCKAKMIVKV 89 56778899************999999888799******************************98889999999************** PP FAR1 71 ekdgkwevtkleleHnHela 90 dg+wev+ +++eHnH+l Traes_7BL_A201C1A091.2 90 I-DGRWEVIYFVSEHNHPLI 108 *.****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.3E-14 | 3 | 108 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MNTSRKDVKT GELIKQQFVC NKFRKPDVDD GGAEKIPVLD DIVEQAKDDN EDEAIVFLDD 60 DSKGKTRSKK RKRDKIVQTG CKAKMIVKVI DGRWEVIYFV SEHNHPLIDK PCLTKYLRSH 120 QGIPPEERAF LTHLHNCNLT TGFEPHP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020194049.1 | 3e-50 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A446TNG9 | 1e-84 | A0A446TNG9_TRITD; Uncharacterized protein | ||||
STRING | Traes_7BL_A201C1A091.2 | 1e-106 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9528 | 8 | 43 |
Publications ? help Back to Top | |||
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