PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7BL_7A3E02172.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | SRS | ||||||||
Protein Properties | Length: 69aa MW: 7124.98 Da PI: 4.9443 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 31.6 | 4.9e-10 | 5 | 68 | 64 | 126 |
DUF702 64 aasaaeaaskrkrelkskkqs.alsstklssaeskkeletsslPeevsseavfrcvrvssvddg 126 a++aa+ a+kr+rel + +++t ++ a++++ ++P+e+s eavfrcvr++ vd+ Traes_7BL_7A3E02172.1 5 ATAAAAVANKRPRELVRSLGRlPSATTAMVDATTSSGEGDGRFPPELSLEAVFRCVRIGPVDEP 68 444566778888888444333034445566667777778888********************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 2.4E-8 | 6 | 68 | IPR007818 | Protein of unknown function DUF702 |
Sequence ? help Back to Top |
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Protein Sequence Length: 69 aa Download sequence Send to blast |
NSAAATAAAA VANKRPRELV RSLGRLPSAT TAMVDATTSS GEGDGRFPPE LSLEAVFRCV 60 RIGPVDEPD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB678347 | 3e-39 | AB678347.1 Hordeum vulgare subsp. vulgare Lks2 gene for putative short internodesfamily transcription factor, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020192925.1 | 4e-39 | protein SHI RELATED SEQUENCE 1-like | ||||
Refseq | XP_020192926.1 | 4e-39 | protein SHI RELATED SEQUENCE 1-like | ||||
TrEMBL | A0A3B6SKK2 | 2e-38 | A0A3B6SKK2_WHEAT; Uncharacterized protein | ||||
STRING | Traes_7BL_7A3E02172.1 | 2e-41 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1354 | 35 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66350.1 | 8e-08 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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