PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AS_EACFD92AA.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family SRS
Protein Properties Length: 55aa    MW: 5617.16 Da    PI: 5.402
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AS_EACFD92AA.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70258.13.4e-18138117154
                 DUF702 117 cvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                            cvr++ vd++e+e+aYqt+vsigGhvfkGiL+d G+++
  Traes_7AS_EACFD92AA.1   1 CVRLGPVDEAEAEVAYQTTVSIGGHVFKGILHDVGPDT 38 
                            9***********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.6E-15137IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016248.9E-17136IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 55 aa     Download sequence    Send to blast
CVRLGPVDEA EAEVAYQTTV SIGGHVFKGI LHDVGPDTSI TGGTRTGHHA VEGSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3735252e-52AK373525.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3033N03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156435.11e-28protein SHI RELATED SEQUENCE 1-like
TrEMBLA0A3B6RIP51e-28A0A3B6RIP5_WHEAT; Uncharacterized protein
TrEMBLA0A446XEP01e-28A0A446XEP0_TRITD; Uncharacterized protein
TrEMBLA0A453RQF58e-29A0A453RQF5_AEGTS; Uncharacterized protein
TrEMBLM8CFS26e-29M8CFS2_AEGTA; Uncharacterized protein
STRINGTraes_7AS_EACFD92AA.11e-31(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135435124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19790.21e-12SHI-related sequence 7
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]