PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7AS_EACFD92AA.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | SRS | ||||||||
Protein Properties | Length: 55aa MW: 5617.16 Da PI: 5.402 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 58.1 | 3.4e-18 | 1 | 38 | 117 | 154 |
DUF702 117 cvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 cvr++ vd++e+e+aYqt+vsigGhvfkGiL+d G+++ Traes_7AS_EACFD92AA.1 1 CVRLGPVDEAEAEVAYQTTVSIGGHVFKGILHDVGPDT 38 9***********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.6E-15 | 1 | 37 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01624 | 8.9E-17 | 1 | 36 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 55 aa Download sequence Send to blast |
CVRLGPVDEA EAEVAYQTTV SIGGHVFKGI LHDVGPDTSI TGGTRTGHHA VEGSS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK373525 | 2e-52 | AK373525.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3033N03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020156435.1 | 1e-28 | protein SHI RELATED SEQUENCE 1-like | ||||
TrEMBL | A0A3B6RIP5 | 1e-28 | A0A3B6RIP5_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446XEP0 | 1e-28 | A0A446XEP0_TRITD; Uncharacterized protein | ||||
TrEMBL | A0A453RQF5 | 8e-29 | A0A453RQF5_AEGTS; Uncharacterized protein | ||||
TrEMBL | M8CFS2 | 6e-29 | M8CFS2_AEGTA; Uncharacterized protein | ||||
STRING | Traes_7AS_EACFD92AA.1 | 1e-31 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1354 | 35 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19790.2 | 1e-12 | SHI-related sequence 7 |
Publications ? help Back to Top | |||
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