PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

M-type_MADS

Protein Properties

Length: 114aa MW: 13114.3 Da PI: 11.0632

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_7AS_ADA694FCE.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	94.4	5.1e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 kri+nk+ rqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++g+l+e+s+ Traes_7AS_ADA694FCE.2 9 KRIDNKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFST 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	32.66	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.8E-39	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	6.11E-39	2	61	No hit	No description
SuperFamily	SSF55455	1.57E-29	2	70	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.4E-32	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.1E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.4E-32	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.4E-32	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 114 aa Download sequence Send to blast
MGRGKVELKR IDNKISRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFST RGRLFEFSTS 60 SWYTIATHGY HGSPSSPSLL FWGRIRRVFH PSMSARWGAS PFLFWCLLCE LRSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	7e-20	1	62	1	62	Myocyte-specific enhancer factor 2B
1tqe_Q	7e-20	1	62	1	62	Myocyte-specific enhancer factor 2B
1tqe_R	7e-20	1	62	1	62	Myocyte-specific enhancer factor 2B
1tqe_S	7e-20	1	62	1	62	Myocyte-specific enhancer factor 2B
6c9l_A	7e-20	1	62	1	62	Myocyte-specific enhancer factor 2B
6c9l_B	7e-20	1	62	1	62	Myocyte-specific enhancer factor 2B
6c9l_C	7e-20	1	62	1	62	Myocyte-specific enhancer factor 2B
6c9l_D	7e-20	1	62	1	62	Myocyte-specific enhancer factor 2B
6c9l_E	7e-20	1	62	1	62	Myocyte-specific enhancer factor 2B
6c9l_F	7e-20	1	62	1	62	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.
UniProt	Probable transcription factor. May be involved in the control of flowering time. {ECO:0000269\|PubMed:16217607, ECO:0000269\|PubMed:9085264, ECO:0000269\|Ref.8}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ512359	1e-98	DQ512359.1 Triticum aestivum MADS-box transcription factor TaAGL8 (AGL8) mRNA, complete cds.
GenBank	DQ512362	1e-98	DQ512362.1 Triticum aestivum MADS-box transcription factor TaAGL5 (AGL5) mRNA, complete cds.
GenBank	DQ534491	1e-98	DQ534491.1 Triticum aestivum MADS3 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020184037.1	5e-35	MADS-box transcription factor 5-like
Swissprot	A2Y9P0	2e-35	MADS5_ORYSI; MADS-box transcription factor 5
Swissprot	Q0DEB8	2e-35	MADS5_ORYSJ; MADS-box transcription factor 5
TrEMBL	A0A446X2Y5	2e-43	A0A446X2Y5_TRITD; Uncharacterized protein
STRING	Traes_7AS_ADA694FCE.2	1e-78	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP129	38	398

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24260.3	2e-33	MIKC_MADS family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cui R, et al. Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa). Plant J., 2010. 61(5): p. 767-81 [PMID:20003164] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]