PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

ARF

Protein Properties

Length: 262aa MW: 29349.6 Da PI: 9.6985

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_7AS_582E3076D.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	67.8	1.5e-21	79	180	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ W++++i+r++++r++lt+GW+ F + ++L +gD+v+F Traes_7AS_582E3076D.1 79 FCKTLTASDTSTHGGFSVPRRAAERIfprldfSLQPPA-QELQARDLHDTIWTFRHIFRGQPKRHLLTTGWSLFISGKRLLAGDSVLF 165 99***************************9777665.49********************************************* PP EE-SSSEE..EEEEE-S CS B3 83 kldgrsefelvvkvfrk 99 ++ +++l+++++r+ Traes_7AS_582E3076D.1 166 I--RDAKQQLLLGIRRA 180 *..45677789999997 PP
2	Auxin_resp	73.4	6.6e-25	205	261	1	56
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsse 56 aahaa+++s F+++YnPras+seFv++++k++ka++ +++s+GmRf+m+fete+s + Traes_7AS_582E3076D.1 205 AAHAAANNSQFTIFYNPRASPSEFVIPFAKYQKAVYgNQLSLGMRFRMMFETEESGT 261 79********************************9***************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	9.68E-43	68	208	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	3.8E-39	71	194	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.04E-18	78	168	No hit	No description
Pfam	PF02362	1.7E-19	79	180	IPR003340	B3 DNA binding domain
SMART	SM01019	2.0E-18	79	181	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.194	79	181	IPR003340	B3 DNA binding domain
Pfam	PF06507	1.6E-19	205	261	IPR010525	Auxin response factor

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009734	Biological Process	auxin-activated signaling pathway
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MVAASMRKDA DAQIPSYPNL PSKLICILHS VTMESDPDTD EVYARMTLQP VSNVTQCDKE 60 ILLASELALK QNKPQTEFFC KTLTASDTST HGGFSVPRRA AERIFPRLDF SLQPPAQELQ 120 ARDLHDTIWT FRHIFRGQPK RHLLTTGWSL FISGKRLLAG DSVLFIRDAK QQLLLGIRRA 180 NRQPTNLSSS VLSSDSMHIG VLAAAAHAAA NNSQFTIFYN PRASPSEFVI PFAKYQKAVY 240 GNQLSLGMRF RMMFETEESG TR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ldu_A	1e-124	2	262	84	341	Auxin response factor 5
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin under dark condition. Down-regulated by auxin under light condition. {ECO:0000269\|PubMed:17408882}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK374613	0.0	AK374613.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3070K03.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020151212.1	0.0	auxin response factor 21-like
Swissprot	Q6YZW0	1e-165	ARFU_ORYSJ; Auxin response factor 21
TrEMBL	A0A3B6RI00	0.0	A0A3B6RI00_WHEAT; Auxin response factor
TrEMBL	A0A446XCX1	0.0	A0A446XCX1_TRITD; Auxin response factor
TrEMBL	A0A446XCX5	0.0	A0A446XCX5_TRITD; Auxin response factor
TrEMBL	A0A446XCX8	0.0	A0A446XCX8_TRITD; Auxin response factor
TrEMBL	A0A453RKK4	0.0	A0A453RKK4_AEGTS; Auxin response factor
STRING	Traes_7AS_582E3076D.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1409	35	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	1e-123	auxin response factor 19

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]