PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_7AL_19F222799.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 746aa MW: 81307.3 Da PI: 6.8893 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.8 | 3.4e-15 | 24 | 68 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+ E++++++a k++G W +I +++g ++t+ q++s+ qk+ Traes_7AL_19F222799.2 24 RERWTEAEHKRFLEALKLYGRA-WQRIEEHVG-TKTAVQIRSHAQKF 68 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.99E-16 | 18 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.147 | 19 | 73 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.7E-16 | 22 | 71 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 6.5E-12 | 23 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-12 | 24 | 67 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.2E-8 | 24 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.09E-8 | 26 | 69 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 746 aa Download sequence Send to blast |
MEINSSGEET VIKVRKPYTI TKQRERWTEA EHKRFLEALK LYGRAWQRIE EHVGTKTAVQ 60 IRSHAQKFFT KLEKEAINNG TSPGQAHDID IPPPRPKRKP NCPYPRKGCL SSETPTREVP 120 KSSVSLSNSN AEMASNGTLQ LTCIRKLQRK ELSENGSCSE VINIFREAPS ASFSSSNKSS 180 SNHGVSGGIE PTKTENKDIA TMERKSTSID VGKDVKDIND QEMERNNRVH ISSNYDGSHE 240 DCLDNSMKHM QLKPNTVETT YTGQHAASAP LYQMNKTGAT GAPDPGTEGS HPDQTSDRVG 300 GANGSMDCIH PTLPVDPKIG SSSTAQSFPH NYAGFAPTMQ CHCNQDAYRS SLNMSSTFSN 360 MLVSTLLSNP TVHAAARLAA SYWPAADSNI PVGPNQEVFA ENAQGRHIGS PPSMASVVAA 420 TVAAASAWWA TQGLLPLFAP PMAFPFVPVP TASFPTTDVQ RATENCPVDN APKECQVAQE 480 QGQPEAMIVV ASSGSDKSGK GEVSPHTELN ISPADKVETT PPTGAETSDA FGNKKKQDRS 540 SCGSNTPSSS DVEAEHVPEN QDQANDKTQQ ACCSNSSAGD MNHRRFRNIS STNDSWKEVS 600 EEGRMAFDKL FSRGKLPQSF SPPQAEGLKV VPRGEQDEAT TVTVDLNKSA AVMDHELDTL 660 VGPRATFPIE LSHLNMKSRR TGFKPYKRCS VEAKENRVPA ADEVSGKHQM ETDEKLKHLY 720 STVNQQSILM DLASHPRPKH HMDQQK |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK360966 | 0.0 | AK360966.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1129K17. | |||
GenBank | JN603242 | 0.0 | JN603242.1 Hordeum vulgare circadian clock associated 1 (CCA1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020195458.1 | 0.0 | protein LHY | ||||
Refseq | XP_020195459.1 | 0.0 | protein LHY | ||||
Refseq | XP_020195460.1 | 0.0 | protein LHY | ||||
Refseq | XP_020195461.1 | 0.0 | protein LHY | ||||
TrEMBL | A0A3B6RJX7 | 0.0 | A0A3B6RJX7_WHEAT; Uncharacterized protein | ||||
STRING | Traes_7AL_19F222799.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6031 | 34 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G46830.1 | 9e-41 | circadian clock associated 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|