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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7AL_07431A665.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | TALE | ||||||||
Protein Properties | Length: 182aa MW: 20668.8 Da PI: 5.4063 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 24.5 | 4.8e-08 | 119 | 152 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + Traes_7AL_07431A665.2 119 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 152 569*****************************87 PP | |||||||
2 | ELK | 30.4 | 9e-11 | 73 | 94 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++L+++++E++ Traes_7AL_07431A665.2 73 ELKHELKQGYREKLVDIREEIL 94 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03789 | 1.4E-6 | 73 | 94 | IPR005539 | ELK domain |
SMART | SM01188 | 0.0014 | 73 | 94 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 10.196 | 73 | 93 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.596 | 93 | 156 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.51E-16 | 95 | 160 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.9E-10 | 95 | 160 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.87E-11 | 96 | 157 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.9E-25 | 100 | 157 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.5E-18 | 113 | 152 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MEAVMACWEL EQTLQSLTGA SPGEGTGATM SDDEDNPVDS ESNMFDGNDV SDGMGFGMLT 60 EGERSLVERV RQELKHELKQ GYREKLVDIR EEILRKRRAG KLPGDTASTL KAWWQAHAKW 120 PYPTEEDKAR LVQETGLQLK QINNWFINQR KRNWHSNPTS SSSDKSKRKR NNAGDGNAEQ 180 SW |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 149 | 169 | RKRNWHSNPTSSSSDKSKRKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353945 | 0.0 | AK353945.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1003P14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020196996.1 | 1e-132 | homeobox protein knotted-1-like 11 isoform X1 | ||||
Swissprot | Q0E3C3 | 1e-115 | KNOS2_ORYSJ; Homeobox protein knotted-1-like 2 | ||||
TrEMBL | A0A287XVJ5 | 1e-132 | A0A287XVJ5_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A287XVR6 | 1e-132 | A0A287XVR6_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A287XVV9 | 1e-132 | A0A287XVV9_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A3B6RRP6 | 1e-131 | A0A3B6RRP6_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446XX96 | 1e-131 | A0A446XX96_TRITD; Uncharacterized protein | ||||
TrEMBL | F2CQP3 | 1e-132 | F2CQP3_HORVV; Predicted protein (Fragment) | ||||
STRING | Traes_7AL_07431A665.2 | 1e-133 | (Triticum aestivum) | ||||
STRING | Traes_7DL_77A6A7FBF.2 | 1e-132 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP564 | 38 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.1 | 2e-95 | KNOTTED1-like homeobox gene 3 |
Publications ? help Back to Top | |||
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