PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6DS_EF4A57213.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ARR-B | ||||||||
Protein Properties | Length: 624aa MW: 67472.7 Da PI: 6.5708 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 88.5 | 6e-28 | 204 | 257 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+ +t+e+v+SHLQkYRl Traes_6DS_EF4A57213.1 204 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKKILDLMNVENITRENVASHLQKYRL 257 79*******************.********************************8 PP | |||||||
2 | Response_reg | 79.8 | 9.2e-27 | 26 | 134 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeeda 86 vl vdD+p+ +++l+++l++ +y +v+++ ++ al++l+e++ +Dl++ D+ mp+mdG++ll+ e++lp+i+++a+ge +++ Traes_6DS_EF4A57213.1 26 VLAVDDDPTCLKVLENLLRRCDY-HVTTTGQAATALRMLRENKdqFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGETQTV 111 799********************.***************888889*******************87754.558*************** PP HHHHHTTESEEEESS--HHHHHH CS Response_reg 87 lealkaGakdflsKpfdpeelvk 109 + + Ga d+l Kp+ e+l + Traes_6DS_EF4A57213.1 112 MKGITHGACDYLLKPVRLEQLKT 134 ********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 1.7E-183 | 1 | 624 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 1.4E-43 | 23 | 171 | No hit | No description |
SuperFamily | SSF52172 | 4.84E-36 | 23 | 144 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 2.9E-33 | 24 | 136 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 43.905 | 25 | 140 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 3.5E-24 | 26 | 135 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 8.97E-29 | 27 | 140 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-29 | 201 | 262 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.189 | 201 | 260 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.81E-20 | 202 | 261 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-24 | 204 | 257 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.2E-6 | 206 | 256 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 624 aa Download sequence Send to blast |
MTVEGRVSGG GDGGGGKDKF PVGMRVLAVD DDPTCLKVLE NLLRRCDYHV TTTGQAATAL 60 RMLRENKDQF DLVISDVHMP DMDGFKLLEL VGLEMDLPVI MLSANGETQT VMKGITHGAC 120 DYLLKPVRLE QLKTIWQHVI RRNTKNRGSD NDDAGQKGPN AEGENGGANR NKRQSRRDRD 180 DNGDDGDDSD ENSNDNGDSS SQKKPRVVWS VELHRKFVAA VNQLGIDKAV PKKILDLMNV 240 ENITRENVAS HLQKYRLYLK RMSMDASRQA NLVAALGGRN PAYSNMNSMD VFRHYNNAYG 300 RYRPVPTSSH SQSNNLVARM NSPSAYGMHG LLSPQSQPLH LGHAQNNLGT SLNDLGVNNG 360 NLIRGAHMST MGTGTSGNSF ANISNGAPLA PTNRAVQSLE SNNRQHLGRI NSSSTDSFSS 420 FASDSPHFPD LGRSSNTWQT AVPSNIQQLG QNGSMSQASL HGNGLRMEPV SSYAPPSNQI 480 TSLGNDMQNQ VAPLASNTLP MVFNQGAAPF TFGNSTNSRE ALNSNLAFSN SGINTSLPNL 540 RIDNSVVPRQ TLDGGNTGGV PSLQDGKIDQ QAVGNQLNYN NNDLVGTSGL QRELSGGLDD 600 IVVDMFRPDN DNGGIFIDTD WGLV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 1e-25 | 200 | 263 | 1 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK363760 | 0.0 | AK363760.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2018L02. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020158305.1 | 0.0 | two-component response regulator ORR24 | ||||
Swissprot | Q6H805 | 0.0 | ORR24_ORYSJ; Two-component response regulator ORR24 | ||||
TrEMBL | A0A3B6QF58 | 0.0 | A0A3B6QF58_WHEAT; Two-component response regulator | ||||
TrEMBL | A0A453NHJ7 | 0.0 | A0A453NHJ7_AEGTS; Two-component response regulator | ||||
TrEMBL | M8AZB0 | 0.0 | M8AZB0_AEGTA; Two-component response regulator | ||||
STRING | EMT09822 | 0.0 | (Aegilops tauschii) | ||||
STRING | Traes_6DS_EF4A57213.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8147 | 34 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-106 | response regulator 12 |
Publications ? help Back to Top | |||
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