PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HD-ZIP

Protein Properties

Length: 205aa MW: 22606.6 Da PI: 10.5741

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_6DS_D281B7D32.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.2	7e-19	89	143	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++t+eq Le+ F+ ++ +s+ e+++LA +lgL+ rqV vWFqNrRa+ k Traes_6DS_D281B7D32.1 89 RKKLRLTAEQAALLEKSFRAHNVLSHVEKRDLAGQLGLKPRQVEVWFQNRRARTK 143 788899***********************************************98 PP
2	HD-ZIP_I/II	111.1	7.2e-36	89	177	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kk+rl++eq++lLE+sF++++ L++ +K +la +Lgl+prqv+vWFqnrRARtk+kq+E d+e L+r++++l+++n+rL++e +e r Traes_6DS_D281B7D32.1 89 RKKLRLTAEQAALLEKSFRAHNVLSHVEKRDLAGQLGLKPRQVEVWFQNRRARTKLKQTELDCELLRRWCERLSDDNARLRSELAETR 176 69*********************************************************************************99877 PP HD-ZIP_I/II 89 e 89 + Traes_6DS_D281B7D32.1 177 A 177 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.1E-18	64	146	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.2E-18	72	146	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.151	85	145	IPR001356	Homeobox domain
SMART	SM00389	1.0E-15	87	149	IPR001356	Homeobox domain
Pfam	PF00046	3.1E-16	89	143	IPR001356	Homeobox domain
CDD	cd00086	2.30E-13	89	146	No hit	No description
PRINTS	PR00031	4.8E-6	116	125	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	120	143	IPR017970	Homeobox, conserved site
PRINTS	PR00031	4.8E-6	125	141	IPR000047	Helix-turn-helix motif
SMART	SM00340	5.9E-11	145	189	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	4.4E-7	145	176	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MSSLTTISSA SKESLEVEEL VDTRLSLVIG TGSQPPPVQA PLLRPEARER GEKRIGSSAR 60 QHGKRARAVH SGSDVDDDDN GGDAAGRARK KLRLTAEQAA LLEKSFRAHN VLSHVEKRDL 120 AGQLGLKPRQ VEVWFQNRRA RTKLKQTELD CELLRRWCER LSDDNARLRS ELAETRAVLL 180 VGGSHDSRLM GCPSCNRLAG GRRAA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	86	92	RARKKLR
2	137	145	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020189367.1	1e-145	putative homeobox-leucine zipper protein HOX26
Swissprot	Q67UX6	1e-43	HOX26_ORYSJ; Putative homeobox-leucine zipper protein HOX26
TrEMBL	A0A453NC76	1e-144	A0A453NC76_AEGTS; Uncharacterized protein
STRING	Traes_6DS_D281B7D32.1	1e-145	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8315	32	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22800.1	5e-37	HD-ZIP family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]