PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6DS_965C8FA80.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | TALE | ||||||||
Protein Properties | Length: 184aa MW: 20777 Da PI: 5.4063 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.7 | 8.1e-08 | 121 | 154 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp+++++++L +++gL+ +q+ +WF N+R + Traes_6DS_965C8FA80.1 121 KWPYPTEDDKARLVQETGLQLKQINNWFINQRKR 154 569*****************************87 PP | |||||||
2 | ELK | 27.8 | 5.9e-10 | 75 | 96 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK +L+++Y+++L+++++E++ Traes_6DS_965C8FA80.1 75 ELKSELKQGYKEKLVDIREEIM 96 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01188 | 8.3E-4 | 75 | 96 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.83 | 75 | 95 | IPR005539 | ELK domain |
Pfam | PF03789 | 2.6E-6 | 75 | 96 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.515 | 95 | 158 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.56E-16 | 97 | 160 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.9E-10 | 97 | 162 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.31E-11 | 98 | 159 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-24 | 102 | 158 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.8E-18 | 115 | 154 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MEAVMGCWEL EQSLQSLTGA SPGEGTGATM SDDEDNQVDS ETNMFDGSDG SDGMGFGPLI 60 LTEGERSLIE RVRHELKSEL KQGYKEKLVD IREEIMRKRR AGKLPGDTAA TLKAWWQAHS 120 KWPYPTEDDK ARLVQETGLQ LKQINNWFIN QRKRNWHSSN TASSSEKTKK KRNVTGNDGT 180 EQSW |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 151 | 171 | RKRNWHSSNTASSSEKTKKKR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020195853.1 | 1e-134 | homeobox protein knotted-1-like 2 isoform X1 | ||||
Swissprot | Q0E3C3 | 1e-124 | KNOS2_ORYSJ; Homeobox protein knotted-1-like 2 | ||||
TrEMBL | A0A3B6QCI1 | 1e-133 | A0A3B6QCI1_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453NH48 | 1e-133 | A0A453NH48_AEGTS; Uncharacterized protein | ||||
STRING | Traes_6DS_965C8FA80.1 | 1e-134 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP564 | 38 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.1 | 5e-91 | KNOTTED1-like homeobox gene 3 |
Publications ? help Back to Top | |||
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