PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DS_8F684013D.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 139aa    MW: 15352.3 Da    PI: 9.0046
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DS_8F684013D.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.73.7e-3176135159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            ++Dgy+WrKYGqK+ k++++pr+Y+rC++a gCpvkkkv+rsaed+++++ tYegeHnh+
  Traes_6DS_8F684013D.2  76 VKDGYQWRKYGQKVTKDNPCPRAYFRCSFApGCPVKKKVQRSAEDKTILVATYEGEHNHS 135
                            58***************************99****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081127.0671137IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.3E-3174137IPR003657WRKY domain
SuperFamilySSF1182904.58E-2775137IPR003657WRKY domain
SMARTSM007747.0E-3676136IPR003657WRKY domain
PfamPF031063.9E-2677134IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
EGGSVSPSRK RKSEESLGTP PPSHQQHYAA GLAYAAAPDQ AECTSGEPCK RIREECKPVV  60
SKRYVHADPA DLSLVVKDGY QWRKYGQKVT KDNPCPRAYF RCSFAPGCPV KKKVQRSAED  120
KTILVATYEG EHNHSQPPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-24721381075WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1712SRKRKS
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Represses specifically gibberellic acid (GA)-induced promoters in aleurone cells, probably by interfering with GAM1 (PubMed:15047897). Regulates, probably indirectly, the activation of defense-related genes such as GF14E during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (By similarity). Confers resistance to the virulent bacterial pathogen X.oryzae pv. oryzae (Xoo) 13751, probably via the regulation of NPR1 and PR1b defense signaling pathways (PubMed:16919842). {ECO:0000250|UniProtKB:Q6QHD1, ECO:0000269|PubMed:15047897, ECO:0000269|PubMed:16919842}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide and fungal cerebroside elicitors) and pathogen infection (e.g. the compatible pathogenic fungus M.grisea race 007, M.grisea crabgrass BR29). Accumulates in response to M.oryzae (By similarity). Triggered by defense signaling molecules, such as salicylic acid (SA), methyl jasmonate (MeJA), 1-aminocyclo-propane-1-carboxylic acid (ACC), wounding and pathogen infection (e.g. X.oryzae) (PubMed:16919842). Repressed by gibberellic acid (GA) (at protein level) (PubMed:15047897). Induced by abscisic acid (ABA) in aleurone cells, roots and leaves (PubMed:25110688). Accumulates in response to uniconazole, a GA biosynthesis inhibitor. Triggered strongly by cold in leaves, stems and developing spikes, but moderately by drought and salt stresses (By similarity). {ECO:0000250|UniProtKB:Q6QHD1, ECO:0000269|PubMed:15047897, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5366670.0AJ536667.1 Hordeum vulgare mRNA for putative WRKY1 protein.
GenBankAK3602690.0AK360269.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1114C23.
GenBankAY5415860.0AY541586.1 Hordeum vulgare WRKY transcription factor (wrky38) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020192814.12e-99WRKY transcription factor WRKY71-like
SwissprotQ6IEL08e-74WRK71_ORYSI; WRKY transcription factor WRKY71
TrEMBLA0A1D6BE515e-98A0A1D6BE51_WHEAT; WRKY transcription factor 33-3
TrEMBLA0A453NHD45e-98A0A453NHD4_AEGTS; Uncharacterized protein
TrEMBLA0A453NHF84e-99A0A453NHF8_AEGTS; Uncharacterized protein
STRINGTraes_6DS_8F684013D.22e-98(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP182238103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.28e-40WRKY DNA-binding protein 18
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]