PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DS_2B2F9C290.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 870aa    MW: 97606.6 Da    PI: 7.2628
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DS_2B2F9C290.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.2e-05557579123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++C+ Cg +F+ + +Lk+H+++H
  Traes_6DS_2B2F9C290.2 557 HSCEECGACFRKPAHLKQHMQSH 579
                            79*******************99 PP
2zf-C2H220.21.6e-06585609123
                            EEET..TTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                            + Cp  dC+ s+ r+++L+rH+ tH
  Traes_6DS_2B2F9C290.2 585 FACPleDCPFSYIRRDHLNRHMLTH 609
                            78**********************9 PP
3zf-C2H215.74.2e-05614639123
                            EEET..TTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                            ++Cp   Cgk+Fs k n +rH +  H
  Traes_6DS_2B2F9C290.2 614 FTCPleGCGKRFSIKANIQRHVKEmH 639
                            89********************9988 PP
4zf-C2H215.45.5e-05658680323
                            ET..TTTEEESSHHHHHHHHHHT CS
                zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                            C+   C+k F+ +s+Lk+H  +H
  Traes_6DS_2B2F9C290.2 658 CQeeGCKKAFKYPSQLKKHEESH 680
                            77779**************9988 PP
5zf-C2H213.30.00026747771223
                            EET..TTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                            kC+   C  sFs+ksnL+ H++  H
  Traes_6DS_2B2F9C290.2 747 KCSfdGCECSFSNKSNLNMHMKAcH 771
                            799999****************955 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513755.4263565IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.45166100IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.3E-56698IPR011990Tetratricopeptide-like helical domain
PfamPF015350.776892IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.627136170IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.5E-4141163IPR002885Pentatricopeptide repeat
PfamPF015351.8E-4141164IPR002885Pentatricopeptide repeat
PfamPF015350.0078169195IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.986198232IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.1E-4200233IPR002885Pentatricopeptide repeat
PfamPF015354.1E-4200229IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.739268298IPR002885Pentatricopeptide repeat
PfamPF015350.0075273294IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.3E-5298356IPR011990Tetratricopeptide-like helical domain
PfamPF130417.1E-11298346IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.233299333IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.2E-8301335IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.572334364IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.138370400IPR002885Pentatricopeptide repeat
PfamPF015350.4373397IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.3E-5402464IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513755.327402432IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.322436470IPR002885Pentatricopeptide repeat
SMARTSM0035542511534IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.277557584IPR007087Zinc finger, C2H2
SMARTSM003550.008557579IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.6E-7557584IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280559579IPR007087Zinc finger, C2H2
SuperFamilySSF576679.54E-11570611No hitNo description
Gene3DG3DSA:3.30.160.609.9E-8585611IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003557.2E-4585609IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.536585614IPR007087Zinc finger, C2H2
PROSITE patternPS000280587609IPR007087Zinc finger, C2H2
SuperFamilySSF576671.19E-8595646No hitNo description
Gene3DG3DSA:3.30.160.604.1E-6612639IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.133614644IPR007087Zinc finger, C2H2
SMARTSM003554.0E-4614639IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280616639IPR007087Zinc finger, C2H2
PROSITE profilePS501579.245656681IPR007087Zinc finger, C2H2
SMARTSM003550.039656680IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.6E-6658680IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280658680IPR007087Zinc finger, C2H2
SMARTSM003555688713IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280690713IPR007087Zinc finger, C2H2
SMARTSM0035518716737IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.59E-8731788No hitNo description
Gene3DG3DSA:3.30.160.602.9E-5731768IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.99746776IPR007087Zinc finger, C2H2
SMARTSM003550.0027746771IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280748771IPR007087Zinc finger, C2H2
PROSITE profilePS501578.642777803IPR007087Zinc finger, C2H2
SMARTSM003552.2777803IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280779803IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 870 aa     Download sequence    Send to blast
MNRSVCHHLL AHCRSLRELE RIHARAVTHG LHPSNQSISC TLFRRYADFG RPAEARRLFG  60
EIPCPDLVSY TSLMSLHLQL SQHHEAMSAF SCAVASGHRP DGFVVVGALS ASGGAGDLRA  120
GLGVHGLIFR CGLGSELVVG NALVDMYCRC GRFEGVLGVF DEMAVKDEVT WGSMLHGYMK  180
CVGVDAALSF FDQMPVKSTV SWTALVTGHV QAKQPIRALE IFGRMVLEGH RPTHVTIVGV  240
LSACADIGSL DLGRVIHGYG SKFNISTNII VSNALMDMYA KSGSIEMAFT VFEEVPLKDA  300
FTWTTMISSF TVQGDGIKAL ELFEDMLRSG IVPNSVTFVS VLSACSHAGL IQQGRELFDN  360
MRRIYNIKPQ LEHYGCIVDL LGRGGLLEEA EALIYDMDVE PDTVIWRSLL SACLVHGNDR  420
LAEIAGQEII KREPGDDGVY VLLWNIYASS DRWKEALDIR KQMLTRKIFK KPGCSWIEVD  480
GGVHEFLMSS GDGIDGDGKS EETHSKDIRR IKCEFCTVVR SKMYLIRAHM VAQHQDELDS  540
SEIYNSNGEK VVHGVGHSCE ECGACFRKPA HLKQHMQSHS KERSFACPLE DCPFSYIRRD  600
HLNRHMLTHE GKLFTCPLEG CGKRFSIKAN IQRHVKEMHE EEHECKMDDT KSNQQVICQE  660
EGCKKAFKYP SQLKKHEESH AKLDYVEVVC CEPGCLKTFT NAKCLRAHNQ SCHLYTQCDI  720
CGEKHLRKNI KRHLRAHHKV HSTERLKCSF DGCECSFSNK SNLNMHMKAC HDQVRPFECR  780
VAGCGKTFPY KHVRDNHEKS SCHVYVEGDY EEMDEQLRSR PRGGRKRAAV TVETLTRKRV  840
TIPSEASSLE DGAEYMRWML SDGDGSNHAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D3e-5694124330PLS9-PPR
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3745270.0AK374527.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3068C12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181266.10.0putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic
TrEMBLA0A453MVM80.0A0A453MVM8_AEGTS; Uncharacterized protein
STRINGTraes_6DS_2B2F9C290.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.25e-90transcription factor IIIA
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]