PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HD-ZIP

Protein Properties

Length: 225aa MW: 24759.7 Da PI: 8.353

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_6DS_17B737547.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59	7.6e-19	106	160	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++t eq Lee F+ ++ +s+ e+ +LA++lgL+ rqV vWFqNrRa+ k Traes_6DS_17B737547.1 106 RKKLRLTVEQAALLEESFRAHNVLSHGEKHDLARQLGLKPRQVEVWFQNRRARTK 160 778899***********************************************98 PP
2	HD-ZIP_I/II	112.8	2.1e-36	106	191	1	86
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 +kk+rl+ eq++lLEesF++++ L++ +K++lar+Lgl+prqv+vWFqnrRARtk+kq+E d+e L+r++++l+++n+rL++e +e Traes_6DS_17B737547.1 106 RKKLRLTVEQAALLEESFRAHNVLSHGEKHDLARQLGLKPRQVEVWFQNRRARTKLKQTELDCELLRRWCERLSDDNARLRRELAE 191 69*******************************************************************************99865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.7E-18	85	160	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.57E-18	90	163	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.329	102	162	IPR001356	Homeobox domain
SMART	SM00389	9.3E-16	104	166	IPR001356	Homeobox domain
CDD	cd00086	1.92E-13	106	163	No hit	No description
Pfam	PF00046	3.5E-16	106	160	IPR001356	Homeobox domain
PRINTS	PR00031	3.7E-6	133	142	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	137	160	IPR017970	Homeobox, conserved site
PRINTS	PR00031	3.7E-6	142	158	IPR000047	Helix-turn-helix motif
SMART	SM00340	2.2E-12	162	203	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MSSLTTISSG AMEESQEVEE LVDTRLSLVI GAASRPPPTV LALLPATSPE NEAAARRKRK 60 GQENGAGGVA ATSRQHSKRA KTVHDSSDVD DDDDDGGDAA RSDGTRKKLR LTVEQAALLE 120 ESFRAHNVLS HGEKHDLARQ LGLKPRQVEV WFQNRRARTK LKQTELDCEL LRRWCERLSD 180 DNARLRRELA ETLSSSPAFL SRLTMANDKA VCSSCNKLTS ARMPA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	104	110	TRKKLRL
2	154	162	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020189357.1	1e-162	putative homeobox-leucine zipper protein HOX26
Swissprot	Q67UX6	3e-44	HOX26_ORYSJ; Putative homeobox-leucine zipper protein HOX26
TrEMBL	A0A3B6QDN6	1e-161	A0A3B6QDN6_WHEAT; Uncharacterized protein
STRING	Traes_6DS_17B737547.1	1e-162	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8315	32	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22800.1	1e-37	HD-ZIP family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]