PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_6DS_086930130.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

DBB

Protein Properties

Length: 215aa MW: 22182.3 Da PI: 4.8332

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_6DS_086930130.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.3	5.7e-07	7	47	6	39
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39 C+ +++ e++ C ++ lC+ C + H+ H+v Traes_6DS_086930130.1 7 CDACGQAEATVLCCADEAALCRRCDAAVHSAnklagrhHRV 47 *****************************668889996655 PP
2	zf-B_box	22.6	2.2e-07	70	111	4	37
zf-B_box 4 rkCpeHeeke.lqlfCedCqqllCedClleeHkg.......H 37 + C+ +++++ ++fC +++ llC++C +++H H Traes_6DS_086930130.1 70 PACDICQQEKtGHFFCVEDRALLCRSCDVAIHTAtphasthH 111 57***95559*****************95567444544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	2.1E-9	2	49	IPR000315	B-box-type zinc finger
Pfam	PF00643	3.9E-5	7	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.542	7	49	IPR000315	B-box-type zinc finger
CDD	cd00021	2.21E-6	7	49	No hit	No description
SMART	SM00336	4.4E-11	67	115	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.1E-5	70	109	IPR000315	B-box-type zinc finger
CDD	cd00021	1.58E-6	70	115	No hit	No description
PROSITE profile	PS50119	8.603	72	116	IPR000315	B-box-type zinc finger

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MLMKIGCDAC GQAEATVLCC ADEAALCRRC DAAVHSANKL AGRHHRVALL SSAPAGSSSP 60 GAGDDGGTHP ACDICQQEKT GHFFCVEDRA LLCRSCDVAI HTATPHASTH HRFLITGVRV 120 GVDQDHIGDV SGATVGSPSN SSANGSNSMP TSENFAIANG QRSEEGAGLI GGGEDDIGQQ 180 QQWPWSDIFA DDGVGMDQHQ CYPGFSEPGS SSLTG

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269\|PubMed:18182030, ECO:0000269\|PubMed:18540109, ECO:0000269\|PubMed:18796637, ECO:0000269\|PubMed:21070414, ECO:0000269\|PubMed:21427283}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. {ECO:0000269\|PubMed:18182030}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK358383	0.0	AK358383.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1075F08.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020167650.1	1e-133	B-box zinc finger protein 22-like
Swissprot	Q9SYM2	9e-44	BBX22_ARATH; B-box zinc finger protein 22
TrEMBL	A0A3B6NNM7	1e-136	A0A3B6NNM7_WHEAT; Uncharacterized protein
TrEMBL	A0A446V909	1e-136	A0A446V909_TRITD; Uncharacterized protein
STRING	Traes_6DS_086930130.1	1e-156	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12151	25	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78600.1	7e-42	light-regulated zinc finger protein 1

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]