PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

ERF

Protein Properties

Length: 153aa MW: 15609.4 Da PI: 9.7183

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_6DL_FD6D63D1A.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.4	3.1e-17	75	123	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+G+r ++ +g+Wv+eIr+p+ + +r++lg++ tae+Aa+a++ a+++l+g Traes_6DL_FD6D63D1A.1 75 FYRGIR-CR-NGKWVSEIREPR----KaRRIWLGTYPTAEMAAAAYDVAARALRG 123 79*9.66.7*****94....36***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	3.0E-27	75	137	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	7.85E-19	75	131	IPR016177	DNA-binding domain
PROSITE profile	PS51032	20.231	75	131	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.0E-27	76	131	IPR001471	AP2/ERF domain
CDD	cd00018	6.82E-17	76	131	No hit	No description
Pfam	PF00847	8.7E-10	76	123	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MAEQPSATSS SAAAPPQVQV QAAAEPATEL SPGAPASPHS PPVHLGDTVG TTTATALAAT 60 SSGEPSPRST GKHPFYRGIR CRNGKWVSEI REPRKARRIW LGTYPTAEMA AAAYDVAARA 120 LRGSDAVLNF PGAAASRPVP ASASPEDIRA AAA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-14	72	131	11	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP098896	4e-93	FP098896.1 Phyllostachys edulis cDNA clone: bphylf043a21, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020159886.1	1e-102	ethylene-responsive transcription factor ERF027-like
Swissprot	Q9LYD3	1e-32	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	A0A1D6B2K1	1e-100	A0A1D6B2K1_WHEAT; Uncharacterized protein
TrEMBL	A0A453P9Y3	1e-100	A0A453P9Y3_AEGTS; Uncharacterized protein
STRING	Traes_6DL_FD6D63D1A.1	1e-103	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3654	27	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52020.1	1e-24	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]