PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_F47CFC6D9.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 344aa    MW: 38746.4 Da    PI: 7.4412
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_F47CFC6D9.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.000196486323
                           ET..TTTEEESSHHHHHHHHHHT CS
                zf-C2H2  3 Cp..dCgksFsrksnLkrHirtH 23
                           C+   Cgk+F +   L++H  +H
  Traes_6DL_F47CFC6D9.1 64 CSydGCGKTFVDAGALRKHAHVH 86
                           78889**************9887 PP
2zf-C2H216.62.2e-0591115123
                            EEET..TTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                            y+C+   Cgk F ++s LkrH   H
  Traes_6DL_F47CFC6D9.1  91 YVCHyeGCGKKFLDSSKLKRHFLIH 115
                            9********************8877 PP
3zf-C2H221.94.7e-07121145123
                            EEET..TTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                            ++Cp   Cgk Fs   nLk H++tH
  Traes_6DL_F47CFC6D9.1 121 FVCPheGCGKAFSLDFNLKAHMKTH 145
                            89**********************9 PP
4zf-C2H215.93.8e-05151176123
                            EEET..TTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                            + Cp   Cg++F++ s L+ H r  H
  Traes_6DL_F47CFC6D9.1 151 HMCPypECGRRFTQESKLRAHFRAqH 176
                            689999***************99877 PP
5zf-C2H212.10.00061217242123
                            EEET..TTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                            y+Cp   C k + + + L+ H+++ H
  Traes_6DL_F47CFC6D9.1 217 YVCPydGCAKAYIHEYKLNLHLKKeH 242
                            99*********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.5E-135888IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9286291IPR007087Zinc finger, C2H2
SMARTSM003550.00186286IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806486IPR007087Zinc finger, C2H2
SuperFamilySSF576671.64E-865115No hitNo description
Gene3DG3DSA:3.30.160.602.1E-1489111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.92191120IPR007087Zinc finger, C2H2
SMARTSM003550.002491115IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028093115IPR007087Zinc finger, C2H2
SuperFamilySSF576671.33E-13102154No hitNo description
Gene3DG3DSA:3.30.160.608.0E-20112146IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.739121150IPR007087Zinc finger, C2H2
SMARTSM003554.3E-4121145IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280123145IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.2E-8151173IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.219151181IPR007087Zinc finger, C2H2
SMARTSM003550.0077151176IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280153176IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.9E-8209239IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.28E-5212240No hitNo description
PROSITE profilePS501578.871217247IPR007087Zinc finger, C2H2
SMARTSM003550.012217242IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280219242IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MQGLHRRYRW IKEWVPQDLV IAGGPCALYK WVREDRLAAL KSKDKEEGAC TAKPDPATEV  60
LFLCSYDGCG KTFVDAGALR KHAHVHGERQ YVCHYEGCGK KFLDSSKLKR HFLIHTGEKN  120
FVCPHEGCGK AFSLDFNLKA HMKTHFADNY HMCPYPECGR RFTQESKLRA HFRAQHEKSG  180
AQNPGGPVMN RNALGDHPHN TAKSLVTPPV PSADRPYVCP YDGCAKAYIH EYKLNLHLKK  240
EHPNHYSDAG AQAGPSRGTV SKNSRRSKPN LTTSMPLAKI SKRSGYTVPS PAVSIPEEHQ  300
WPRKVLYEDD SEETEEEGDN LEEGGLRYRA ASDGDDDEET EEEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C2e-33641728117PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3569600.0AK356960.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1042P17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149431.10.0uncharacterized zinc finger protein At4g06634 isoform X1
SwissprotQ2V3L31e-104YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A3B6QH500.0A0A3B6QH50_WHEAT; Uncharacterized protein
TrEMBLA0A453NXK30.0A0A453NXK3_AEGTS; Uncharacterized protein
STRINGTraes_6DL_F47CFC6D9.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20943899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-107C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  4. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]