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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6DL_EF6D5D4FA.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | Dof | ||||||||
Protein Properties | Length: 306aa MW: 32457.8 Da PI: 8.1325 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 127.1 | 5.2e-40 | 60 | 120 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++ lkcprCdst+tkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk++s Traes_6DL_EF6D5D4FA.1 60 HDQPLKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGSLRNVPVGGGCRKNKRAS 120 7899******************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 5.0E-31 | 58 | 118 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.5E-33 | 61 | 118 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.357 | 64 | 118 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 66 | 102 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010067 | Biological Process | procambium histogenesis | ||||
GO:0010087 | Biological Process | phloem or xylem histogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MMAGAAHPMH FCMDSDWLKG IVPEDQGGMG SSSPSGELII ACPEPMQAQQ AADRRLRPQH 60 DQPLKCPRCD STHTKFCYYN NYSLSQPRYF CKTCRRYWTK GGSLRNVPVG GGCRKNKRAS 120 AAKKPSAAAA IAPPISMMQQ LHHGRHMAET GLHLSFSGMP PPPVSAADPL CSLGLFDWKY 180 DHILSGSGGF ESANSEAHFT GPGMMGIANG SGGGGAEYHA LNALRYAAGL GEHLALPFGG 240 ATSRAERDSV VAEMKPQAER LLSLEWCGEA SRAPTETSIS SLGGLGLWSG MVTGAAHHHH 300 GSSAAI |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00580 | DAP | Transfer from AT5G62940 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK376388 | 0.0 | AK376388.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3122H18. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020196058.1 | 0.0 | dof zinc finger protein DOF1.6-like | ||||
TrEMBL | A0A3B6QJZ5 | 0.0 | A0A3B6QJZ5_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453PDK3 | 0.0 | A0A453PDK3_AEGTS; Uncharacterized protein | ||||
STRING | Traes_6DL_EF6D5D4FA.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4704 | 32 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62940.1 | 1e-40 | Dof family protein |
Publications ? help Back to Top | |||
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