PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_6DL_D4F2CDDDC.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

WRKY

Protein Properties

Length: 481aa MW: 50500.2 Da PI: 6.0107

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_6DL_D4F2CDDDC.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.7	3.8e-31	229	287	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp++++itY++eHnh+ Traes_6DL_D4F2CDDDC.1 229 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRTDPNMLVITYTSEHNHP 287 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.7E-31	222	289	IPR003657	WRKY domain
PROSITE profile	PS50811	33.178	223	289	IPR003657	WRKY domain
SuperFamily	SSF118290	1.31E-26	226	289	IPR003657	WRKY domain
SMART	SM00774	1.5E-38	228	288	IPR003657	WRKY domain
Pfam	PF03106	4.4E-26	230	287	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence Send to blast
MCDYFLKRAD GDQQAGDLTD IVRAGGAMPA GSTDPPSTAT EWLQLPADPI LFPLPQTSSS 60 DGAGPSSADA LGDPFSGLPD AFSTDYPSSS GSAAADFFDA VQDAMGVGMA KQVGFVDTTG 120 CGGGGTTVGA GGGFLDMRNH HMFPGEMPMR VLSPYALMGG GAAKLGVPMA GHGQAAGPCA 180 FDAVAGLQMS SSPRGGGIKR RKNQARKVVC IPAPAAAVAG KTTGEVVPSD LWAWRKYGQK 240 PIKGSPYPRG YYRCSSSKGC PARKQVERSR TDPNMLVITY TSEHNHPWPT QRNVLAGSTR 300 SHYAKNSSNT DAASSKNSKN SSRNQHKPVV KAESKDQSAA TPAATSTTTT ATTSTGNNTP 360 PMAVKEEAEM ERRIGGDTTA TVGYYSDHLL QQMFSQSYRP MMPEEAGGYH HQDDFFADLT 420 ELDSDPVSLI FSTEYMEARP GKEKAAAKDD VDSLFMMDWA PASAAVTTSA GSALEQGDMG 480 L

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence Send to blast

MCDYFLKRAD GDQQAGDLTD IVRAGGAMPA GSTDPPSTAT EWLQLPADPI LFPLPQTSSS  60
DGAGPSSADA LGDPFSGLPD AFSTDYPSSS GSAAADFFDA VQDAMGVGMA KQVGFVDTTG  120
CGGGGTTVGA GGGFLDMRNH HMFPGEMPMR VLSPYALMGG GAAKLGVPMA GHGQAAGPCA  180
FDAVAGLQMS SSPRGGGIKR RKNQARKVVC IPAPAAAVAG KTTGEVVPSD LWAWRKYGQK  240
PIKGSPYPRG YYRCSSSKGC PARKQVERSR TDPNMLVITY TSEHNHPWPT QRNVLAGSTR  300
SHYAKNSSNT DAASSKNSKN SSRNQHKPVV KAESKDQSAA TPAATSTTTT ATTSTGNNTP  360
PMAVKEEAEM ERRIGGDTTA TVGYYSDHLL QQMFSQSYRP MMPEEAGGYH HQDDFFADLT  420
ELDSDPVSLI FSTEYMEARP GKEKAAAKDD VDSLFMMDWA PASAAVTTSA GSALEQGDMG  480
L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	2e-24	202	290	2	80	Disease resistance protein RRS1
5w3x_D	2e-24	202	290	2	80	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK368994	0.0	AK368994.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2083H02.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020179949.1	0.0	probable WRKY transcription factor 35
Swissprot	O64747	3e-69	WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBL	A0A3B6QJN7	0.0	A0A3B6QJN7_WHEAT; Uncharacterized protein
TrEMBL	A0A453PBR2	0.0	A0A453PBR2_AEGTS; Uncharacterized protein
TrEMBL	N1R428	0.0	N1R428_AEGTA; Putative WRKY transcription factor 35
STRING	EMT18262	0.0	(Aegilops tauschii)
STRING	Traes_6DL_D4F2CDDDC.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2592	38	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	1e-62	WRKY DNA-binding protein 35

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]