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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6DL_AB95B0CE0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | WRKY | ||||||||
Protein Properties | Length: 559aa MW: 58550.3 Da PI: 4.7206 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.8 | 1.4e-30 | 314 | 373 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK+ kg+++pr+YYrCt a Cpv+k+v+r++ed +++++tYeg+Hnh+ Traes_6DL_AB95B0CE0.1 314 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApACPVRKQVQRCQEDMSILITTYEGTHNHP 373 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.2E-32 | 299 | 375 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.41E-27 | 307 | 375 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.162 | 309 | 375 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.7E-37 | 314 | 374 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.7E-27 | 315 | 373 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 559 aa Download sequence Send to blast |
MSSSKRKRAD IDLERRDDDV DDGSGDHQPG EAAPRVQKEG QIKEGEAQAK EVVEVVVDRG 60 GDGSKEEIKC GTQQGGVMEE DKQSPAASAG NDGADGIDDE ESGGGGTRAE EEHMVEAAPG 120 DGDGDHDHTA MAQDELSTMQ EEMEKMKEEN KMLRRVVDRT VRDYYELQTK LAAYQKQPAD 180 QEPKETEVFL SLGGTAPAAA VAEAKSKEEQ AALRPSVGSD DTDDGREGLG LSLSLRTSSY 240 EDEARRDVVD GGAPDIVSDV GKARGYALLE SSRMSPPASG DLAAAGGIGS QQGVNAANRK 300 TRVSVRVRCQ GPTMNDGCQW RKYGQKVAKG NPCPRAYYRC TVAPACPVRK QVQRCQEDMS 360 ILITTYEGTH NHPLPVGATA MASTATAGAG AATFMLLSST SSDAAVSGGP PPASSSYLSP 420 YLQLNSSSQY HSSASPLMSG NMGGGGAQHL SMFGHSSALA SQPATLLKYP WPPNPSHGGA 480 AGLGGGKRPF WGTGGVDDVR PTPLPDNAGT MASDPNQFSA AIATAISNVI GKDGQATRSK 540 EGESSNKWGV VVESLPPHE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-21 | 301 | 377 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK363247 | 0.0 | AK363247.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2013L09. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020173302.1 | 0.0 | probable WRKY transcription factor 9 | ||||
TrEMBL | A0A3B6QIH6 | 0.0 | A0A3B6QIH6_WHEAT; Uncharacterized protein | ||||
STRING | Traes_6DL_AB95B0CE0.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8022 | 34 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68150.1 | 3e-49 | WRKY DNA-binding protein 9 |
Publications ? help Back to Top | |||
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