PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_434BF5425.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 540aa    MW: 56981.5 Da    PI: 6.2306
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_434BF5425.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2156.9e-056582219
                           EETTTTEEESSHHHHHHH CS
                zf-C2H2  2 kCpdCgksFsrksnLkrH 19
                           +C++Cgk F+++ +L  H
  Traes_6DL_434BF5425.1 65 VCENCGKEFTSWKSLLDH 82
                           6***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.66491IPR007087Zinc finger, C2H2
SMARTSM003551806484IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.19E-8235258No hitNo description
PROSITE profilePS5015710.221236263IPR007087Zinc finger, C2H2
PfamPF139123.7E-9236260IPR007087Zinc finger, C2H2
SMARTSM003550.13236258IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280238258IPR007087Zinc finger, C2H2
SuperFamilySSF576676.19E-8353380No hitNo description
PfamPF139121.6E-12357381IPR007087Zinc finger, C2H2
PROSITE profilePS501579.349358380IPR007087Zinc finger, C2H2
SMARTSM003550.46358380IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280360380IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MCGRALGGHM RAHGIADDAL AAEEAFDDDG GGVGESSEAG SPSPTTAKRM YGLRANPGRL  60
RNCRVCENCG KEFTSWKSLL DHGRCSFDED DDLDGSLRSS SPLHNNTDEG VDEDEEEEGD  120
LALASGWSKG KRSRRAKVMI TGSGAISEVQ QPAPSSEEED LANCLVMLSS SRVTQPTVHV  180
DADQESSASA SKDEERNRLL VPQPLSIIPP MTAQFKFSAP QVVVAQHVPT VPRGLFECKA  240
CKKVFTSHQA LGGHRASHKK VKGCFAAKLE SSRNETTHQH AMASAALHDN TRAIPEAVGD  300
TSTTEGKTGN LDAGKATSVG AGEVVVPTAT TEMAIMPIAD AAPVAAAFSP FKKKGKVHEC  360
SICHRVFTSG QALGGHKRCH WLTSSATDPA KLQPVVPDHL MAAMCHHLTL GRPMFDTADQ  420
RILDLNVPTN PSAEAIATRQ AAELNDIPLC LNAPASMYAQ SWTGHSNASH VNKTGTSSRN  480
DAAAAGGAAT EDEADSTSAK KAKVSDLKDM KVAGESLSWL QVGIGISSSE KNEKSTQEGA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3735500.0AK373550.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3034L08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186304.10.0uncharacterized protein LOC109772023
TrEMBLA0A3B6QI900.0A0A3B6QI90_WHEAT; Uncharacterized protein
STRINGTraes_6DL_434BF5425.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35243262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.11e-18C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]