PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6DL_3019F176A.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ERF | ||||||||
Protein Properties | Length: 257aa MW: 26819.7 Da PI: 7.13 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.5 | 1.6e-18 | 84 | 133 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a+++++g Traes_6DL_3019F176A.1 84 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFATAEMAARAHDVAALAIKG 133 69****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.998 | 84 | 141 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.2E-37 | 84 | 147 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.4E-12 | 84 | 133 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-21 | 84 | 142 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-32 | 84 | 142 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-10 | 85 | 96 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.50E-31 | 85 | 143 | No hit | No description |
PRINTS | PR00367 | 1.2E-10 | 107 | 123 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
NLPVPCLASH RNTPLTSSRS RPSLPNNNST TTVSSAVGAT EDSSSGSETT TSSSVEALAS 60 PPSPTATTAS SKKKRPRNDG RHPTYRGVRM RSWGKWVSEI REPRKKSRIW LGTFATAEMA 120 ARAHDVAALA IKGRAAHLNF PDLAHELPRP ATAAPKDVQA AAALAASADF PASATAAANA 180 GAKNPDGPEP SAASASASPP PDTAEDALFD LPDLLFDLRH GPPSCQLSCA SSWDDDVAFA 240 GAGAGVFRLE EPLQWEY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-17 | 82 | 147 | 12 | 75 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00312 | DAP | Transfer from AT2G44940 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY785863 | 0.0 | AY785863.1 Hordeum vulgare subsp. vulgare cultivar Morex HvCBF7 (CBF7) mRNA, complete cds. | |||
GenBank | AY785864 | 0.0 | AY785864.1 Hordeum vulgare subsp. vulgare cultivar Dicktoo HvCBF7 (CBF7) gene, complete cds. | |||
GenBank | AY785865 | 0.0 | AY785865.1 Hordeum vulgare subsp. vulgare cultivar Strider HvCBF7 (CBF7) gene, complete cds. | |||
GenBank | AY785866 | 0.0 | AY785866.1 Hordeum vulgare subsp. vulgare cultivar 88Ab536 HvCBF7 (CBF7) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020194841.1 | 1e-156 | ethylene-responsive transcription factor ERF039-like | ||||
Swissprot | Q8LBQ7 | 7e-56 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | A0A453P8S8 | 1e-154 | A0A453P8S8_AEGTS; Uncharacterized protein | ||||
STRING | Traes_6DL_3019F176A.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 4e-39 | ERF family protein |
Publications ? help Back to Top | |||
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