PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6BS_4C945B9F1.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 99aa    MW: 10610.8 Da    PI: 7.5172
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6BS_4C945B9F1.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.2e-17149455
                    AP2  4 kGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                           +GVr+++ +g+++AeIrd s    +  r +lg+f+taeeAa+a+++ + +++g
  Traes_6BS_4C945B9F1.1  1 RGVRRRP-WGKFAAEIRDSSR---HgVRMWLGTFDTAEEAAAAYDRSAYSMRG 49
                           8******.**********432...25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.7E-30163IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-22158IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.5E-29158IPR001471AP2/ERF domain
PfamPF008471.2E-11149IPR001471AP2/ERF domain
PROSITE profilePS5103222.827157IPR001471AP2/ERF domain
CDDcd000183.10E-26159No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
RGVRRRPWGK FAAEIRDSSR HGVRMWLGTF DTAEEAAAAY DRSAYSMRGR NAVLNFPNQA  60
HVYETEASPG GGAGAGAGPS PSVAMTKVIE LECLEDGVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-291621677Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020195201.11e-56ethylene-responsive transcription factor ERF096-like
SwissprotQ9LSX01e-28ERF96_ARATH; Ethylene-responsive transcription factor ERF096
TrEMBLA0A3B6PFZ56e-67A0A3B6PFZ5_WHEAT; Uncharacterized protein
STRINGTraes_6BS_4C945B9F1.14e-67(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43410.19e-27ERF family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Zander M,Thurow C,Gatz C
    TGA Transcription Factors Activate the Salicylic Acid-Suppressible Branch of the Ethylene-Induced Defense Program by Regulating ORA59 Expression.
    Plant Physiol., 2014. 165(4): p. 1671-1683
    [PMID:24989234]