PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6BL_D87B09F77.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C2H2 | ||||||||
Protein Properties | Length: 259aa MW: 27106.7 Da PI: 8.3158 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.2 | 0.0012 | 98 | 120 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F+++ L H +H Traes_6BL_D87B09F77.1 98 FECKACKKVFTSHQALGGHRASH 120 89**************9999888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.4E-8 | 97 | 120 | No hit | No description |
SMART | SM00355 | 0.13 | 98 | 120 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.5E-9 | 98 | 122 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.221 | 98 | 125 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 100 | 120 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.4E-8 | 218 | 245 | No hit | No description |
Pfam | PF13912 | 6.5E-13 | 222 | 246 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.46 | 223 | 245 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.349 | 223 | 245 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 225 | 245 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MVVGSGAIAE VQQPAPSSEE EDLANCLVML SSSRVTQPAV HVNADQESSA SASKDEERNR 60 LLVPQPLSII PPMTAQFKFS APQVVVAQHV PTVPRGLFEC KACKKVFTSH QALGGHRASH 120 KKVKGCFAAK LESSRNETTH QQTMASAALH DNTKAIPEVV GDTSTAEGRT GNLDANASGK 180 ATSVGAGEVG VPTAATEMAI MPIADAAPAP AAFSPFKKKG KVHECSICHR VFTSGQALGG 240 HKRCHWLTSS ATDPAKLQP |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK373550 | 0.0 | AK373550.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3034L08. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020186304.1 | 1e-166 | uncharacterized protein LOC109772023 | ||||
TrEMBL | A0A446WGJ6 | 0.0 | A0A446WGJ6_TRITD; Uncharacterized protein | ||||
STRING | Traes_6BL_D87B09F77.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3524 | 32 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28200.1 | 4e-14 | C2H2 family protein |
Publications ? help Back to Top | |||
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