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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6BL_A169A3ECB.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 389aa MW: 43698.7 Da PI: 8.5404 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.7 | 4.5e-53 | 16 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 + pGfrFhPtdeelv +yLk+k+++k+l++ e i+++diyk++PwdLpk ++++ekewyf+++rd+ky++++r+nr+t +g+Wkatg+ Traes_6BL_A169A3ECB.1 16 MLPGFRFHPTDEELVRFYLKRKIQQKSLPI-ELIRQLDIYKFDPWDLPKLASTGEKEWYFYCPRDRKYRNSTRPNRVTGAGFWKATGT 102 579***************************.89***************9888999********************************* PP NAM 89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 d++++s+ +++ +glkk+Lvfykgra kg+ktdW+mhe+rl Traes_6BL_A169A3ECB.1 103 DRPIYSSdGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRL 143 ******966677***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.19E-59 | 14 | 175 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.974 | 16 | 175 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-25 | 18 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0045770 | Biological Process | positive regulation of asymmetric cell division | ||||
GO:0048103 | Biological Process | somatic stem cell division | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence Send to blast |
MEEIRSDDME KQDEVMLPGF RFHPTDEELV RFYLKRKIQQ KSLPIELIRQ LDIYKFDPWD 60 LPKLASTGEK EWYFYCPRDR KYRNSTRPNR VTGAGFWKAT GTDRPIYSSD GSKCIGLKKS 120 LVFYKGRAAK GVKTDWMMHE FRLPSLTDPS LPQKKPLEKT IPPNDSWAIC RIFKKTNATA 180 QRALSHSWVS PPLPSTNGAY IPPHLQTTHR SRHSSENTSS AMTNIISSNI QFSSSGYFPS 240 IISSCQSTLN IIDSISRPAT SIVLPPSDAE HQAMSILSAI PLDLPAGMDI ASMVMNASPI 300 TLSNMDRSAP MNIEFAQPQQ CNSNSNMISR CVVDLPDIGN NVGGAPRSMN FPFNMQGPLS 360 DDWRATVPWD SLPCTTEAST NYQPTKCYT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-53 | 18 | 177 | 17 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00537 | DAP | Transfer from AT5G39820 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020171862.1 | 0.0 | putative NAC domain-containing protein 94 | ||||
Swissprot | Q9FIW5 | 1e-105 | NAC94_ARATH; Putative NAC domain-containing protein 94 | ||||
TrEMBL | A0A3B6PQE9 | 0.0 | A0A3B6PQE9_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446WL17 | 0.0 | A0A446WL17_TRITD; Uncharacterized protein | ||||
STRING | Traes_6BL_A169A3ECB.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13717 | 26 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39820.1 | 1e-107 | NAC domain containing protein 94 |
Publications ? help Back to Top | |||
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