PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6BL_3F8DB6043.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | YABBY | ||||||||
Protein Properties | Length: 244aa MW: 26341.3 Da PI: 7.8299 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 220.4 | 5.1e-68 | 19 | 203 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee.........lleelkveeenlk 83 s +eq+Cyv+Cn C++ilav vP +slfk+vtvrCGhC++llsvnl+ aa + ++ ++ ll+e +++ +l Traes_6BL_3F8DB6043.1 19 SPTEQLCYVHCNCCDAILAVGVPCSSLFKTVTVRCGHCANLLSVNLRALLLPPAAPPANQLQFGHSllsptsphgLLDEVAFQTPSLL 106 578********************************************99966555555455555554555788885666665555555 PP YABBY 84 snvekeesastsvssekl..........senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWa 161 + + +++ +++++++++ +p ++rPPekrqrvPsaynrfik+eiqrika+nPdi+hreafsaaaknWa Traes_6BL_3F8DB6043.1 107 MDQASTNLXXXXXXXXXXxxxxxaakpaQQETEQSAKSAPSANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKNWA 194 55554444443333333244555666635555556666777*********************************************** PP YABBY 162 hfPkihfgl 170 hfP+ihfgl Traes_6BL_3F8DB6043.1 195 HFPHIHFGL 203 *******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 4.9E-70 | 20 | 203 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.1E-7 | 146 | 196 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.9E-4 | 152 | 195 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MSSSSSSSAV FNLDHLAPSP TEQLCYVHCN CCDAILAVGV PCSSLFKTVT VRCGHCANLL 60 SVNLRALLLP PAAPPANQLQ FGHSLLSPTS PHGLLDEVAF QTPSLLMDQA STNLXXXXXX 120 XXXXXXXXXA AKPAQQETEQ SAKSAPSANR PPEKRQRVPS AYNRFIKDEI QRIKAGNPDI 180 THREAFSAAA KNWAHFPHIH FGLMPDQGFK RTFKVQDGAE DMLLKDGLYA AAAAAAANMS 240 VTPL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Seems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB274016 | 1e-112 | AB274016.1 Oryza sativa Japonica Group OsYABBY4 mRNA for OsYABBY4 protein, complete cds. | |||
GenBank | AK106784 | 1e-112 | AK106784.1 Oryza sativa Japonica Group cDNA clone:002-115-H10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020155221.1 | 1e-152 | protein YABBY 4-like isoform X2 | ||||
Swissprot | A2X7Q3 | 1e-117 | YAB4_ORYSI; Protein YABBY 4 | ||||
Swissprot | Q6H668 | 1e-117 | YAB4_ORYSJ; Protein YABBY 4 | ||||
TrEMBL | A0A3B6QIK7 | 1e-150 | A0A3B6QIK7_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453P642 | 1e-150 | A0A453P642_AEGTS; Uncharacterized protein | ||||
STRING | Traes_6BL_3F8DB6043.1 | 1e-166 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1445 | 38 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 2e-59 | YABBY family protein |
Publications ? help Back to Top | |||
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