PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AS_9762AE81D.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HB-other
Protein Properties Length: 357aa    MW: 39468.2 Da    PI: 8.4712
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AS_9762AE81D.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.82.3e-1059105652
                            S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
               Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                            ++ +e +++L + F+++  ps+e +e L+++lg++ +++  WF+N R
  Traes_6AS_9762AE81D.1  59 RIPPEAVQVLRKSFAESELPSREVKENLSTELGISFEKIDKWFKNTR 105
                            667899***************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-1343105IPR009057Homeodomain-like
PROSITE profilePS5007112.76251111IPR001356Homeobox domain
SMARTSM003891.3E-1053115IPR001356Homeobox domain
SuperFamilySSF466893.64E-1153117IPR009057Homeodomain-like
CDDcd000865.96E-1054115No hitNo description
PfamPF000466.7E-858105IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MFGKLTENEK QSEDEDWGTN NRRKKRRVDS AGVGVKSAEG SLDVKSNEKA QPQRRKLFRI  60
PPEAVQVLRK SFAESELPSR EVKENLSTEL GISFEKIDKW FKNTRCAALR DRKAEGNSRV  120
AGPSKRSKQS AGKSGSLGKI DSVDNSYLLP MPEIISVPTH PQGIPERKPE STSRTVRRRV  180
HDKGAPLCPP APAEVKESTS PTTKPGLNPS HVADRIINTE HRAASREDPV AFSDDPFFDA  240
ILSYPTINTN DRAVSREDPV AFSDDPFLDV MLANRDIYTE ERAASHEDVR RPSSDQPFLD  300
VIQNVCGLEH RLQRLKGDML SSAAAPGGAG TAERDLQNQL VVLVPTAELK DKSQPSI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9489546e-54EU948954.1 Zea mays clone 391409 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158011.10.0pathogenesis-related homeodomain protein isoform X3
RefseqXP_020158012.10.0pathogenesis-related homeodomain protein isoform X4
TrEMBLA0A446V7860.0A0A446V786_TRITD; Uncharacterized protein
TrEMBLA0A446V7970.0A0A446V797_TRITD; Uncharacterized protein
TrEMBLA0A446V7B00.0A0A446V7B0_TRITD; Uncharacterized protein
STRINGTraes_6AS_9762AE81D.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85502227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.26e-24pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]