PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6AS_84E7FEDB3.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ERF | ||||||||
Protein Properties | Length: 218aa MW: 22455.2 Da PI: 9.39 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 29.5 | 1.9e-09 | 40 | 77 | 15 | 55 |
AP2 15 WvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 Wv+eIr p g+++r++lg++ ta+ Aa+a++a ++l+g Traes_6AS_84E7FEDB3.1 40 WVSEIRAP---GQKTRIWLGSHSTAKAAARAYDATLLCLKG 77 *******8...557************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 15.158 | 20 | 87 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-10 | 39 | 93 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-17 | 39 | 87 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.38E-10 | 40 | 88 | IPR016177 | DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
GGQTVADAQP AGAGRRSRRS RPGAGRARLQ PARVECSLAW VSEIRAPGQK TRIWLGSHST 60 AKAAARAYDA TLLCLKGASA AADLNFPVRF PFDLPAAAMS PKSIQRVGAA AAAAGASAYV 120 FDLAGADDSA SANAVDFTGA DYSASAVTPE YYSSSGDASP VSSPETASSG TTDLDGVDLL 180 CRCSHRPSSR CQPRCLLHVR RNARANMAKC VKPPVGCT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK370870 | 1e-119 | AK370870.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2118P17. | |||
GenBank | AK376100 | 1e-119 | AK376100.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3114M17. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020156807.1 | 1e-56 | ethylene-responsive transcription factor ERF014-like | ||||
TrEMBL | A0A446X6U5 | 9e-58 | A0A446X6U5_TRITD; Uncharacterized protein | ||||
STRING | Traes_6AS_84E7FEDB3.1 | 1e-154 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3197 | 34 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G44830.1 | 1e-15 | ERF family protein |
Publications ? help Back to Top | |||
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