PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AS_690C97429.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NF-YC
Protein Properties Length: 283aa    MW: 31394.6 Da    PI: 5.1223
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AS_690C97429.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC175.55.5e-551052091102
                  NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtr 85 
                            ql+ fw++q   ie+atdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa+tr
  Traes_6AS_690C97429.1 105 QLREFWATQmeeIEQATDFKNHTLPLARIKKIMKADEDVRMISAEAPVVFAKACEVFILELTLRSWMHTEENKRRTLQKNDIAAAITR 192
                            89*****996677899************************************************************************ PP

                  NF-YC  86 tdifdflvdivprdelk 102
                            tdi+dflvdi+prd++k
  Traes_6AS_690C97429.1 193 TDIYDFLVDIIPRDDMK 209
                            **************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.3009.2E-478119IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF471132.51E-3385199IPR009072Histone-fold
Gene3DG3DSA:1.10.20.103.7E-37120191IPR009072Histone-fold
PfamPF008089.4E-21127190IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MKINCSIPLI VLRSAQEVFG FARTRSHMEP SSQPEPVVGV ATAGSQAYPP PAAYPAPAMP  60
AAIPPGSQPA VPFPANPAQL SAQHQLVYQQ AQQFHQQLQQ QQQQQLREFW ATQMEEIEQA  120
TDFKNHTLPL ARIKKIMKAD EDVRMISAEA PVVFAKACEV FILELTLRSW MHTEENKRRT  180
LQKNDIAAAI TRTDIYDFLV DIIPRDDMKE EGLGLPRVGL PPAALGAPAD AYPPYYYVQA  240
QQVPGVGMMY GGQQGHPVAY AWQQPQGQQA EEAPEEQQQS PSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B5e-58112205295NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177183RRTLQKN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9027930.0GU902793.1 Triticum monococcum nuclear transcription factor Y subunit C7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188795.10.0nuclear transcription factor Y subunit C-4-like
SwissprotQ655V51e-120NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBLM8AIC50.0M8AIC5_TRIUA; Nuclear transcription factor Y subunit C-2
STRINGTRIUR3_16626-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27033790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.25e-64nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]