PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6AS_4EEA3E388.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | LBD | ||||||||
Protein Properties | Length: 237aa MW: 26079.3 Da PI: 6.4947 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 119.8 | 1.5e-37 | 29 | 129 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C aCk+lrrkC+++Cv+ap+f++eq +++f +hk+FGasnv+kll+ lp +r++a++++ yeA+ar++dPvyG+v++i++lqqq Traes_6AS_4EEA3E388.1 29 PCGACKFLRRKCVSGCVFAPHFCHEQgAAHFGTIHKVFGASNVSKLLTGLPSIDRRKAAATISYEAQARLHDPVYGCVAHIFALQQQA 116 7*************************89************************************************************ PP DUF260 88 eqlkaelallkee 100 +l+a+l++lk++ Traes_6AS_4EEA3E388.1 117 VNLQAQLESLKAQ 129 ********99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.365 | 28 | 130 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.1E-36 | 29 | 127 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MIHFTSCKEQ EYTTSIDQVA GAMIGFSSPC GACKFLRRKC VSGCVFAPHF CHEQGAAHFG 60 TIHKVFGASN VSKLLTGLPS IDRRKAAATI SYEAQARLHD PVYGCVAHIF ALQQQAVNLQ 120 AQLESLKAQA PQGYTNTCSV SSPEEDSIKA KVMAYQKGEA RMPRPAELCP AVKSESESYF 180 GNDLMTCTSM QSSQDYNISH VYTPDYTAPF NDEGIHSSTM LPVDIQEYLQ DNGNYWH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-33 | 25 | 125 | 7 | 106 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-33 | 25 | 125 | 7 | 106 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020163832.1 | 1e-162 | LOB domain-containing protein 17-like | ||||
TrEMBL | A0A3B6NK68 | 1e-179 | A0A3B6NK68_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446V310 | 1e-179 | A0A446V310_TRITD; Uncharacterized protein | ||||
STRING | Traes_6AS_4EEA3E388.1 | 1e-180 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2501 | 38 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42440.1 | 7e-49 | LBD family protein |
Publications ? help Back to Top | |||
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