PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6AS_1537629B3.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HSF | ||||||||
Protein Properties | Length: 458aa MW: 49871.3 Da PI: 5.0525 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 106.9 | 1.6e-33 | 20 | 111 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS HSF_DNA-bind 2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 Fl k+ye+++d++++ ++sws ++ +sfvv+++ efa ++Lp yFkhsnf+SF+RQLn+YgF+k++ e+ weF +++F k Traes_6AS_1537629B3.1 20 FLLKTYEMVDDPATDAVVSWSdASDTSFVVWNSPEFAARLLPAYFKHSNFSSFIRQLNTYGFRKIDPER---------WEFGNEYFVK 98 9********************76679****************************************999.........********** PP XXXXXXXXXXXXX CS HSF_DNA-bind 89 gkkellekikrkk 101 g+k+ll++i r+k Traes_6AS_1537629B3.1 99 GQKHLLKNIYRRK 111 ***********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 1.24E-32 | 16 | 110 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 3.3E-35 | 16 | 110 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 3.6E-57 | 16 | 110 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.2E-18 | 20 | 43 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.0E-29 | 20 | 110 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.2E-18 | 59 | 71 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 60 | 84 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.2E-18 | 72 | 84 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 458 aa Download sequence Send to blast |
MEGSGAVGAR GGGGGGPAPF LLKTYEMVDD PATDAVVSWS DASDTSFVVW NSPEFAARLL 60 PAYFKHSNFS SFIRQLNTYG FRKIDPERWE FGNEYFVKGQ KHLLKNIYRR KPIHSHSHQP 120 GALPDNERSF FEDEIDRLAR EKANLQAELW KSKQQESGTM FQIEALERRA VDMEQRQGKM 180 IAFLQQASKN PHFVSKLVKM AEASSMFADA LHKKRRLSGL DYAVEATETA SFCDDHSATS 240 RQEMGNLLNQ HFSDKLKLGL CSAAAESNLV TLSTQSSHED NGSPHGRHPP VHDGMGTGCL 300 PLVPQIMELS DTGTSICPSK SSFFAPAVND EGLSPCHLSL TLASCSMDVD RGQASNADGS 360 TTINEGSDNP PEATATAMGG NPKASVDAGT AEAPTPREDT WVAAEPAAPV KANDNFWEQF 420 LTERPGDASS GPRDPSMDKE QTEGGGKDDR EVTEQLKL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 8e-22 | 11 | 110 | 17 | 129 | Heat shock factor protein 1 |
5d5v_B | 8e-22 | 11 | 110 | 17 | 129 | Heat shock factor protein 1 |
5d5v_D | 8e-22 | 11 | 110 | 17 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK355564 | 0.0 | AK355564.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1022K17. | |||
GenBank | AK357504 | 0.0 | AK357504.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1055A05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020200706.1 | 0.0 | heat stress transcription factor A-5 | ||||
Swissprot | Q6K6S5 | 0.0 | HSFA5_ORYSJ; Heat stress transcription factor A-5 | ||||
TrEMBL | A0A3B6NJV7 | 0.0 | A0A3B6NJV7_WHEAT; Uncharacterized protein | ||||
STRING | Traes_6AS_1537629B3.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9000 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13980.1 | 1e-104 | HSF family protein |
Publications ? help Back to Top | |||
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