PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AS_10D92215D.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 928aa    MW: 102389 Da    PI: 5.9342
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AS_10D92215D.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.71.1e-23135236199
                            EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                            f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++g++W++++i+r++++r++lt+GW+ F +a++L +gD+v+
  Traes_6AS_10D92215D.2 135 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELVAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFISAKRLVAGDSVL 220
                            99*****************************86555544..8********************************************** PP

                            EEE-SSSEE..EEEEE-S CS
                     B3  82 Fkldgrsefelvvkvfrk 99 
                            F   ++++ +l+++++r+
  Traes_6AS_10D92215D.2 221 FI--WNDNNQLLLGIRRA 236
                            **..7777778**99997 PP
2Auxin_resp120.61.2e-39261344183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            aahaast+s F+++YnPras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldp rWpnS+Wrs+k
  Traes_6AS_10D92215D.2 261 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVK 344
                            79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.4E-48120264IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.1E-42127250IPR015300DNA-binding pseudobarrel domain
CDDcd100171.52E-21134235No hitNo description
PROSITE profilePS5086313.07135237IPR003340B3 DNA binding domain
PfamPF023623.5E-22135236IPR003340B3 DNA binding domain
SMARTSM010191.0E-24135237IPR003340B3 DNA binding domain
PfamPF065071.5E-34261344IPR010525Auxin response factor
SuperFamilySSF542775.04E-8786871No hitNo description
PfamPF023095.6E-8788882IPR033389AUX/IAA domain
PROSITE profilePS5174522.036796880IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 928 aa     Download sequence    Send to blast
MNLSPSAGGG GLPDQPASPE ASEEHRCLNS ELWHACAGPL VSLPAVGSRV LYFPQGHSEQ  60
VSASTNKEME SQIPNYPNLP PQLICQLHNV TMHADAETDE VYAQMTLQPL SPQELKDPFL  120
PAELGNASKQ PTNYFCKTLT ASDTSTHGGF SVPRRAAEKV FPPLDFTQQP PAQELVAKDL  180
HGNEWKFRHI FRGQPKRHLL TTGWSVFISA KRLVAGDSVL FIWNDNNQLL LGIRRANRSQ  240
TVMPSSVLSS DSMHIGLLAA AAHAASTNSR FTIFYNPRAS PSEFVIPLAK YVKAVYHTRI  300
SVGMRFRMLF ETEESSVRRY MGTITGISDL DPARWPNSHW RSVKVGWDES TAGERQPRVS  360
LWEIEPLTTY PMYSSPFPMR LKRPWPTGLP SLYGTGGKED DLTSSLMWLR DGANPGFQSF  420
SFGGLGMSPW MQPMMDSSLL GLQPDMYQAM SAAAFQNTTK QVSPTLLQFQ QPQNIAGRSA  480
LLSSQILQQV QPQFQEMHHQ NINDSAIQGH NQSEYLQQQL QRCQSFNGQK SPPPQQQESH  540
HQHQQQQSQC MQTPQHQQMQ EQKHSPDFQC VPNGLSVFSQ LSSTNQSPPS TLQTVSAFSQ  600
QQNLQDRNIS SLSPSNVPSM HDTLRPFPSE AGSNLQGVPR TTPVPVSDPW SSKRVAMESV  660
IPSSSHVNSP HIQHLDSAPS NIPQSSSLAP LPGRECLVDQ DGNSDNQNHL LFGVNIDSQS  720
LLMQGGIPSL QEDNGCIASL QDDNDSSTIP YSTCNFLSPS QNDFPLNEAL ASSGCLDESG  780
YASFSENSDH VNQPTAAFVK VYKSGAFGRL LDITKFSSYH ELRSEVGRLF GLDGQLEDPA  840
RSGWQLVFVD REDDILLVGD DPWQEFVNSV SCIKVLTPQE VQQMGKQGID LLSSAPARRL  900
GNSCDNYAGR QESRSLSTVI ASVGSVEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1622837051393Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199461.10.0auxin response factor 6-like
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A3B6NNG70.0A0A3B6NNG7_WHEAT; Auxin response factor
TrEMBLA0A446V8R60.0A0A446V8R6_TRITD; Auxin response factor
STRINGTraes_6AS_10D92215D.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20123685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]