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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6AL_E6DAE246D.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ERF | ||||||||
Protein Properties | Length: 64aa MW: 7048.96 Da PI: 10.9777 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.2 | 3.1e-16 | 22 | 64 | 2 | 48 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48 +ykGVr++k +g+Wv+eIr p++ r r++lg+++ +e+Aa+a +a Traes_6AL_E6DAE246D.1 22 KYKGVRRRK-WGKWVSEIRLPNS---RERIWLGSYDAPEKAARAFDA 64 8*****998.**********933...5*****************885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.4E-21 | 21 | 64 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.14E-17 | 22 | 64 | No hit | No description |
Pfam | PF00847 | 8.1E-10 | 22 | 63 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.35E-15 | 22 | 64 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 18.597 | 22 | 64 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.6E-11 | 22 | 64 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-9 | 23 | 34 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-9 | 45 | 61 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 64 aa Download sequence Send to blast |
MSTLSPVSGA ASPEAEGGGG RKYKGVRRRK WGKWVSEIRL PNSRERIWLG SYDAPEKAAR 60 AFDA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 23 | 29 | KGVRRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004257 | 8e-40 | AP004257.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1369_G08. | |||
GenBank | AP014958 | 8e-40 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 8e-40 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020182589.1 | 8e-36 | ethylene-responsive transcription factor RAP2-1-like | ||||
Swissprot | Q84QC2 | 2e-23 | ERF17_ARATH; Ethylene-responsive transcription factor ERF017 | ||||
TrEMBL | A0A3B6NV62 | 2e-36 | A0A3B6NV62_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446VQV6 | 2e-36 | A0A446VQV6_TRITD; Uncharacterized protein | ||||
STRING | Traes_6AL_E6DAE246D.1 | 3e-38 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP861 | 32 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 1e-14 | ERF family protein |
Publications ? help Back to Top | |||
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