PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6AL_D6BA531C11.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | DBB | ||||||||
Protein Properties | Length: 236aa MW: 25105 Da PI: 6.1594 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.3 | 5e-06 | 4 | 43 | 5 | 38 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ + ++ fC ++ lC+ C H+ H+ Traes_6AL_D6BA531C11.1 4 QCDVCAADGASVFCCADEAALCDACDRRVHRAnklagkHR 43 7*****999*********************7677777776 PP | |||||||
2 | zf-B_box | 26.3 | 1.5e-08 | 62 | 94 | 3 | 35 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHk 35 ++ C+ ++ek+ lfC++++ lC++C ++ H Traes_6AL_D6BA531C11.1 62 PPLCDICQEKRGFLFCKEDRAILCRECDVSVHT 94 689***************************994 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.371 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 6.2E-8 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.13E-4 | 3 | 47 | No hit | No description |
PROSITE profile | PS50119 | 9.783 | 60 | 107 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 4.7E-13 | 60 | 107 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 4.5E-7 | 62 | 94 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.42E-7 | 64 | 107 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MKVQCDVCAA DGASVFCCAD EAALCDACDR RVHRANKLAG KHRRFSLLNP SPSSASPSQM 60 PPPLCDICQE KRGFLFCKED RAILCRECDV SVHTASELSM RHARFLLTGV RVSSEPAASP 120 APPPSEEENT SSHCCSGDDD AHGASSGSSI SEYLTKTLPG WHVEDFLVDD ATAAAAAAAS 180 AGFSSGGSYQ GVAPNFAVHD AGYPAGWMRQ EHWVPQMYTE LAGGKRSRTS AASPHW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK362561 | 0.0 | AK362561.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2007P23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020199585.1 | 1e-127 | B-box zinc finger protein 20-like | ||||
Swissprot | Q9LQZ7 | 6e-56 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A3B6NPX6 | 1e-173 | A0A3B6NPX6_WHEAT; Uncharacterized protein | ||||
STRING | Traes_6AL_D6BA531C1.1 | 1e-173 | (Triticum aestivum) | ||||
STRING | Traes_6AL_D6BA531C11.1 | 1e-173 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2392 | 36 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39070.1 | 6e-27 | DBB family protein |