PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_6AL_D6BA531C11.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

DBB

Protein Properties

Length: 236aa MW: 25105 Da PI: 6.1594

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_6AL_D6BA531C11.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	18.3	5e-06	4	43	5	38
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ + ++ fC ++ lC+ C H+ H+ Traes_6AL_D6BA531C11.1 4 QCDVCAADGASVFCCADEAALCDACDRRVHRAnklagkHR 43 7***999*******************7677777776 PP
2	zf-B_box	26.3	1.5e-08	62	94	3	35
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHk 35 ++ C+ ++ek+ lfC++++ lC++C ++ H Traes_6AL_D6BA531C11.1 62 PPLCDICQEKRGFLFCKEDRAILCRECDVSVHT 94 689***************************994 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	9.371	1	47	IPR000315	B-box-type zinc finger
SMART	SM00336	6.2E-8	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	1.13E-4	3	47	No hit	No description
PROSITE profile	PS50119	9.783	60	107	IPR000315	B-box-type zinc finger
SMART	SM00336	4.7E-13	60	107	IPR000315	B-box-type zinc finger
Pfam	PF00643	4.5E-7	62	94	IPR000315	B-box-type zinc finger
CDD	cd00021	1.42E-7	64	107	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009641	Biological Process	shade avoidance
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MKVQCDVCAA DGASVFCCAD EAALCDACDR RVHRANKLAG KHRRFSLLNP SPSSASPSQM 60 PPPLCDICQE KRGFLFCKED RAILCRECDV SVHTASELSM RHARFLLTGV RVSSEPAASP 120 APPPSEEENT SSHCCSGDDD AHGASSGSSI SEYLTKTLPG WHVEDFLVDD ATAAAAAAAS 180 AGFSSGGSYQ GVAPNFAVHD AGYPAGWMRQ EHWVPQMYTE LAGGKRSRTS AASPHW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269\|PubMed:17965270, ECO:0000269\|PubMed:21070414}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK362561	0.0	AK362561.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2007P23.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020199585.1	1e-127	B-box zinc finger protein 20-like
Swissprot	Q9LQZ7	6e-56	BBX21_ARATH; B-box zinc finger protein 21
TrEMBL	A0A3B6NPX6	1e-173	A0A3B6NPX6_WHEAT; Uncharacterized protein
STRING	Traes_6AL_D6BA531C1.1	1e-173	(Triticum aestivum)
STRING	Traes_6AL_D6BA531C11.1	1e-173	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2392	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39070.1	6e-27	DBB family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Xu D, et al. BBX21, an Arabidopsis B-box protein, directly activates HY5 and is targeted by COP1 for 26S proteasome-mediated degradation. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(27): p. 7655-60 [PMID:27325768] Xu DB, et al. The G-Protein β Subunit AGB1 Promotes Hypocotyl Elongation through Inhibiting Transcription Activation Function of BBX21 in Arabidopsis. Mol Plant, 2017. 10(9): p. 1206-1223 [PMID:28827171] Xu D,Jiang Y,Li J,Holm M,Deng XW The B-Box Domain Protein BBX21 Promotes Photomorphogenesis. Plant Physiol., 2018. 176(3): p. 2365-2375 [PMID:29259103] Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains. Plant Physiol., 2018. 176(4): p. 2963-2976 [PMID:29439209] Crocco CD,Ocampo GG,Ploschuk EL,Mantese A,Botto JF Heterologous Expression of AtBBX21 Enhances the Rate of Photosynthesis and Alleviates Photoinhibition in Solanumtuberosum. Plant Physiol., 2018. 177(1): p. 369-380 [PMID:29555784] Kang X, et al. HRB2 and BBX21 interaction modulates Arabidopsis ABI5 locus and stomatal aperture. Plant Cell Environ., 2018. 41(8): p. 1912-1925 [PMID:29748960]