PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6AL_C0E74F959.2 | ||||||||
Common Name | NFYA-A1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NF-YA | ||||||||
Protein Properties | Length: 254aa MW: 27524.8 Da PI: 10.4265 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 104.8 | 7.5e-33 | 98 | 154 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep++VN+KQy++Il+RRq Rakle+++kl +k+rkpylheSRh hA++R+RgsgGrF Traes_6AL_C0E74F959.2 98 DEPIFVNPKQYNGILRRRQLRAKLEAQNKL-TKNRKPYLHESRHLHAMKRARGSGGRF 154 79****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 2.6E-37 | 96 | 157 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.727 | 97 | 157 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 9.2E-29 | 99 | 154 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.9E-22 | 100 | 122 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.9E-22 | 131 | 154 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MLLPSSSSSA YDPKGDSFGK SVDDHMRSTL TFGDKHSVYA GQNTDYGHPM ACISYPFNDS 60 GSGVWAAYGS RAMFQPLMAG GGASATARVP LPVELAADEP IFVNPKQYNG ILRRRQLRAK 120 LEAQNKLTKN RKPYLHESRH LHAMKRARGS GGRFLNSKQL KQQQQSGSAC TKAIADGANS 180 LGSTHLRLGS GAAGDRTNSV SKAMSSQENS KRVAAPAPAF TMIQAARKDD DFFHHHAHHL 240 SFSGHFGQSS DRYT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-20 | 98 | 159 | 2 | 63 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM078746 | 0.0 | KM078746.1 Triticum aestivum CCAAT-binding transcription factor B (NFYA-A1) mRNA, complete cds. | |||
GenBank | KM983028 | 0.0 | KM983028.1 Thinopyrum ponticum x Triticum aestivum NF-YA10-1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020156071.1 | 1e-159 | nuclear transcription factor Y subunit A-4-like isoform X1 | ||||
TrEMBL | A0A0A7HG52 | 0.0 | A0A0A7HG52_9POAL; NF-YA10-1 | ||||
TrEMBL | A0A446VQF8 | 0.0 | A0A446VQF8_TRITD; Uncharacterized protein | ||||
TrEMBL | W5GA07 | 0.0 | W5GA07_WHEAT; CCAAT-binding transcription factor B | ||||
STRING | Traes_6AL_C0E74F959.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13276 | 28 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54160.1 | 3e-34 | nuclear factor Y, subunit A5 |
Publications ? help Back to Top | |||
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