PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AL_8C7AD9FA0.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 285aa    MW: 30926.8 Da    PI: 11.5693
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AL_8C7AD9FA0.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.71.4e-081291572755
                    AP2  27 krkrfslgkfgtaeeAakaaiaarkkleg 55 
                            k+ r++lg+f tae+Aa+a++ a+++++g
  Traes_6AL_8C7AD9FA0.1 129 KKSRIWLGTFATAEMAARAHDVAALAIKG 157
                            369**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103215.92377165IPR001471AP2/ERF domain
SMARTSM003803.2E-1382171IPR001471AP2/ERF domain
CDDcd000181.48E-19125167No hitNo description
Gene3DG3DSA:3.30.730.101.3E-18125166IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-11125166IPR016177DNA-binding domain
PfamPF008473.0E-5128157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
PHSIPRFVFP FHVAPPSASS ALLIIKPPTA SPRLASHRST PLTSSRSRSS LPQQLTPPPQ  60
YHQPWAPRRI PPPAPRPPRR PRRRPWPRRR PRRPPPRRPX XXXXXXXXXX XXXXXXXXXX  120
XXXXREPRKK SRIWLGTFAT AEMAARAHDV AALAIKGRAA HLNFPDLAHE LPRPATAAPK  180
DVQAAAALAA SADFPASATA AANAGAKNPD GPEPSAASAS ASASASAPPD TAEDALFDLP  240
DLLFDLRHGP PSCQLSCASS WDDDVAFAGP GAGVFRLEEP LQWEY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17883RRPRRR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7858631e-134AY785863.1 Hordeum vulgare subsp. vulgare cultivar Morex HvCBF7 (CBF7) mRNA, complete cds.
GenBankAY7858641e-134AY785864.1 Hordeum vulgare subsp. vulgare cultivar Dicktoo HvCBF7 (CBF7) gene, complete cds.
GenBankAY7858651e-134AY785865.1 Hordeum vulgare subsp. vulgare cultivar Strider HvCBF7 (CBF7) gene, complete cds.
GenBankAY7858661e-134AY785866.1 Hordeum vulgare subsp. vulgare cultivar 88Ab536 HvCBF7 (CBF7) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194841.13e-79ethylene-responsive transcription factor ERF039-like
SwissprotQ8LBQ72e-36ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A3B6NQB71e-106A0A3B6NQB7_WHEAT; Uncharacterized protein
TrEMBLA0A446VIZ11e-106A0A446VIZ1_TRITD; Uncharacterized protein
STRINGTraes_6AL_8C7AD9FA0.11e-172(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.12e-23ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]