PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_6AL_46B659A23.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bZIP

Protein Properties

Length: 280aa MW: 29147.5 Da PI: 6.8697

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_6AL_46B659A23.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	25	4.3e-08	184	220	26	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 26 aeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +e+eeL++kv eL+a N +L++el +lk+ ++++++e+ Traes_6AL_46B659A23.2 184 QECEELAQKVSELTAANGTLRSELGQLKD-CKTMETEN 220 89*************************86.66666665 PP

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MYHHPAAAYY AHAHASMVAG VPYMAGESVS AAGKGKRVGK TRCVPSGEIN FSSGSGDAGS 60 QGSLEKGDTG ANQKGSSSSA KRRKSGAANT EDGLSVITNH NSWIQGESQA ATVQNAVTEP 120 PLEDKERSTS KLLVLAPGRA ALTSAAPNLN IGMDPLSASP SSIVQGEVNA AASSQSNASL 180 SQMQECEELA QKVSELTAAN GTLRSELGQL KDCKTMETEN KQLMQSEGPS VVTTLSIQVE 240 APEPHPDRSP RLPVVEHLLP QTSEKMCTNG CLVAGYSKKK

Functional Description ? help Back to Top
Source	Description
UniProt	Interacts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	1e-122	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020175793.1	1e-91	DNA-binding protein EMBP-1
Swissprot	P25032	4e-98	EMBP1_WHEAT; DNA-binding protein EMBP-1
TrEMBL	A0A446VH58	0.0	A0A446VH58_TRITD; Uncharacterized protein
STRING	Traes_6AL_46B659A23.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2160	36	92

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]