PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6AL_393A90DDD.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C2H2 | ||||||||
Protein Properties | Length: 239aa MW: 25985 Da PI: 8.2174 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.7 | 0.0017 | 114 | 138 | 1 | 23 |
EEETTTT..EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg..ksFsrksnLkrHirtH 23 y C+ Cg k+F +L+ H+r + Traes_6AL_393A90DDD.3 114 YACERCGgkKRFAVLADLRGHLRHC 138 89********************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MCFPKNPPRA TMSWSSMPTN CSRSMSTSAI YAARASAATP TLGCTCVRTA TDSRPWTRSP 60 GPVRQSQLMA AMCAFPVLSR GATGTVRTAA SGRXXXXXXX XXXHFRRSHC PKLYACERCG 120 GKKRFAVLAD LRGHLRHCGE EAQWRCSCGT TFSRKDKLFG HLALFEGHMP AMSPPNKDAV 180 TTTTEAPLDI MDEGGIEEQE DGGEGGFDPE FFKEWMEELK DDGVPAGGTI WPGRAAAGQ |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK071320 | 7e-62 | AK071320.1 Oryza sativa Japonica Group cDNA clone:J023088A12, full insert sequence. | |||
GenBank | AP005699 | 7e-62 | AP005699.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0046L23. | |||
GenBank | AP014958 | 7e-62 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 7e-62 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020175848.1 | 4e-98 | zinc finger protein STAR3-like | ||||
Refseq | XP_020175849.1 | 4e-98 | zinc finger protein STAR3-like | ||||
TrEMBL | A0A3B6NQ95 | 5e-97 | A0A3B6NQ95_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446VEG5 | 5e-97 | A0A446VEG5_TRITD; Uncharacterized protein | ||||
STRING | Traes_6AL_393A90DDD.3 | 1e-167 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12550 | 32 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.3 | 2e-25 | C2H2 family protein |
Publications ? help Back to Top | |||
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