PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6AL_2983D4EB6.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | YABBY | ||||||||
Protein Properties | Length: 250aa MW: 26684.3 Da PI: 8.0257 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 220 | 7.2e-68 | 19 | 209 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee....................ll 72 s +eq+Cyv+Cn C+tilav vP +slfk+vtvrCGhC++llsvnl+ aa + ++ ++ ll Traes_6AL_2983D4EB6.1 19 SPTEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRALLLPPAAPPANQLQFGHSllsptsphglldevafqtpsLL 106 578********************************************99965555555455555445556899997666665444322 PP YABBY 73 eelkveeenlksnvekeesastsvssekl...........senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdish 149 ++ +++ + + +++++as+ l +++++++++ +p ++rPPekrqrvPsaynrfik+eiqrika+nPdi+h Traes_6AL_2983D4EB6.1 107 MDQASTNLSGFTGRSNSSCASN------LpampmpaakpaQQETEQSAKSAPSANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDITH 188 2222222111122222233333......1233447888744555555556677*********************************** PP YABBY 150 reafsaaaknWahfPkihfgl 170 reafsaaaknWahfP+ihfgl Traes_6AL_2983D4EB6.1 189 REAFSAAAKNWAHFPHIHFGL 209 *******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 6.8E-71 | 20 | 209 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.15E-7 | 152 | 202 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.1E-4 | 158 | 201 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MSSSSSSSTV FNLDHLAPSP TEQLCYVHCN CCDTILAVGV PCSSLFKTVT VRCGHCANLL 60 SVNLRALLLP PAAPPANQLQ FGHSLLSPTS PHGLLDEVAF QTPSLLMDQA STNLSGFTGR 120 SNSSCASNLP AMPMPAAKPA QQETEQSAKS APSANRPPEK RQRVPSAYNR FIKDEIQRIK 180 AGNPDITHRE AFSAAAKNWA HFPHIHFGLM PDQGFKRTFK AQDGAEDMLL KDGLYAAAAA 240 AAANMSVTPL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Seems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB274016 | 0.0 | AB274016.1 Oryza sativa Japonica Group OsYABBY4 mRNA for OsYABBY4 protein, complete cds. | |||
GenBank | AK106784 | 0.0 | AK106784.1 Oryza sativa Japonica Group cDNA clone:002-115-H10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020155221.1 | 0.0 | protein YABBY 4-like isoform X2 | ||||
Swissprot | A2X7Q3 | 1e-127 | YAB4_ORYSI; Protein YABBY 4 | ||||
Swissprot | Q6H668 | 1e-127 | YAB4_ORYSJ; Protein YABBY 4 | ||||
TrEMBL | A0A3B6NS39 | 0.0 | A0A3B6NS39_WHEAT; Uncharacterized protein | ||||
STRING | Traes_6AL_2983D4EB6.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1445 | 38 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 1e-59 | YABBY family protein |
Publications ? help Back to Top | |||
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