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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6AL_0C0899C15.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | WRKY | ||||||||
Protein Properties | Length: 553aa MW: 57771.3 Da PI: 4.7904 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.8 | 1.4e-30 | 316 | 375 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK+ kg+++pr+YYrCt a Cpv+k+v+r++ed +++++tYeg+Hnh+ Traes_6AL_0C0899C15.1 316 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApACPVRKQVQRCQEDMSILITTYEGTHNHP 375 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.0E-32 | 301 | 377 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.28E-27 | 309 | 377 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.162 | 311 | 377 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.7E-37 | 316 | 376 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.6E-27 | 317 | 375 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 553 aa Download sequence Send to blast |
MSSSKRKRAD IDLERRDDDV DDGSGDHHPG EAAPRVQKEG QIKEGEAPAK EVVEVVVDRG 60 GDGSKEEIKY GTQQGGVIEE DKQSAAAAAD NDAGDGIDDE EGDGGGTGAE DKHMVEAAPG 120 DGYGDGDHEH TAMAQDELST MQEEMEKMKE ENKMLRRVVD RTVRDYYELQ TKLAAYQKQP 180 ADQEPKETEV FLSLGGTAPA AAVAEAKSKE EQAALRPSVG SDDTDDGREG LGLSLSLRTS 240 SYEDEARRDV VDGGAPDIVT DVGKVRGYAL LESSRMSPPA SGDLAAGGGI GSQQGVNAAN 300 RKTRVSVRVR CQGPTMNDGC QWRKYGQKVA KGNPCPRAYY RCTVAPACPV RKQVQRCQED 360 MSILITTYEG THNHPLPVGA TAMASTATAG AGAATFMLLS STTSDAAVSG GPPPASSSYL 420 SPYLQPNSSS QYHSSASPLM SGNMGGGGAQ HLSMFGHSSG LSAQPATHLK YPWPPNPSHG 480 GAAGLGGGKR PFWGTGGVDD VRPTALPDNA GTMASDPNQF SAAIATAISN VIGKDGQATR 540 SKEGESSNKW GGG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-21 | 303 | 379 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK363247 | 0.0 | AK363247.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2013L09. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020173302.1 | 0.0 | probable WRKY transcription factor 9 | ||||
TrEMBL | A0A3B6NUJ4 | 0.0 | A0A3B6NUJ4_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446VPW4 | 0.0 | A0A446VPW4_TRITD; Uncharacterized protein | ||||
STRING | Traes_6AL_0C0899C15.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8022 | 34 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68150.1 | 4e-49 | WRKY DNA-binding protein 9 |
Publications ? help Back to Top | |||
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